Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0005
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    32   0.40 
At1g13050.1 68414.m01513 expressed protein                             31   0.53 
At2g38440.1 68415.m04721 expressed protein                             30   1.6  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    29   3.8  
At1g60985.1 68414.m06865 expressed protein                             28   5.0  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    28   6.6  
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   8.7  
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot...    27   8.7  
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot...    27   8.7  
At2g40070.1 68415.m04923 expressed protein                             27   8.7  

>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +2

Query: 191 HSFHQEEVCCTCCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 334
           +SFH++EV     ++R C++  YF      LP+  ++PGF + + +D+
Sbjct: 195 YSFHRDEVPAESVMHR-CVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 239


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +1

Query: 418 APTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI*SRRGL---PPCWRQXXXX 588
           +P+S P P       EPLP RH    P  +  L   P +     RG    P  WR+    
Sbjct: 67  SPSSRPLPLRPE---EPLPPRH---NPNSARPLQLSPEEQRPPHRGYGSEPTPWRRAPTR 120

Query: 589 XXXXXXXSQEFSLISPATICTALLLLHL 672
                   +   +  PATIC A+LL+ L
Sbjct: 121 PAYQQGPKRTKPMTLPATICCAILLIVL 148


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 518 CSRCDRHGLHEGCRVGSGSKRATCDV 441
           CS+CD H  HEG    SG   AT D+
Sbjct: 808 CSKCDDHISHEGFHDLSGLDNATTDI 833


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 297 PLLASTSY--VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 470
           P+L   S+  +S   + +  IA     IK+ +P W  + IA +   T N Y ++G + + 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 471 TY 476
            Y
Sbjct: 664 EY 665


>At1g60985.1 68414.m06865 expressed protein
          Length = 95

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 155 SLTLGLLYTVWLHSFHQEEVCCTCCVYRSCIILC 256
           SL L LL   W  S     + C C  Y +  ILC
Sbjct: 54  SLCLMLLAASWDESLRHSSISCNCTTYPNYKILC 87


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 433  PTPTSQVALLEPLPTRHPSCRPCRSHRLH--HFPSQLI*SRRGLPPCWR 573
            P P+S      PLP R     P RS   H  HFPSQ +  R+ +   WR
Sbjct: 1317 PAPSSHF----PLPCRIVQSEPQRSSFPHPYHFPSQPVDGRQHMNEEWR 1361


>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 391 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCR 495
           + P   SL A  SLP P        PLP RH  CR
Sbjct: 34  SSPSGRSLSAEVSLPNPLPADVRGYPLPRRHLICR 68


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 414 PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHL 542
           PSS ++P+T + +G LGA    TP +    + S ++ P A HL
Sbjct: 611 PSSVVSPSTSLPAGQLGAPP-ATPSM----VVSPSTSPPAGHL 648


>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
           kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 934

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 506 RIDCITSRRSSSDQEEVCPRAGDNLHRT-YYLHRCSPR 616
           ++ C + R SS+ Q+   P+ GD+L +T  +L R  P+
Sbjct: 729 QVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSRSLPQ 766


>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
           kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 934

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 506 RIDCITSRRSSSDQEEVCPRAGDNLHRT-YYLHRCSPR 616
           ++ C + R SS+ Q+   P+ GD+L +T  +L R  P+
Sbjct: 729 QVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSRSLPQ 766


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 375 KKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAA 536
           K   P  P S    SS   P+   +   + ATT  TP  ++  ++S+   P A+
Sbjct: 201 KSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSRLTPTAS 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,843
Number of Sequences: 28952
Number of extensions: 265425
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)