Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0004
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6GFM7 Cluster: Cytochrome c oxidase subunit 2; n=1; Pl...    33   6.5  

>UniRef50_A6GFM7 Cluster: Cytochrome c oxidase subunit 2; n=1;
           Plesiocystis pacifica SIR-1|Rep: Cytochrome c oxidase
           subunit 2 - Plesiocystis pacifica SIR-1
          Length = 339

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 26  GLFILRSRLRKIN*VITI--VFPR*WQRNMKKQKQKVSSLLRLI*HNYFFYFNRQKIPEV 199
           GL+IL + +  I+ V+ I  +F   W+  MK +  K S L     HN    F    IP +
Sbjct: 36  GLYILLTAVTGISFVLVIGTMFYFMWKYKMKSEDDKTSPLT----HNGKLEFAWSAIPAI 91

Query: 200 NFLILYYWSSKDYV 241
             ++ + W   D+V
Sbjct: 92  FLMVFFVWGELDFV 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,580,249
Number of Sequences: 1657284
Number of extensions: 10385644
Number of successful extensions: 22274
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22268
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)