Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0004
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 28   6.2  
SB_57595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 137 LLRLI*HNYFFYFNRQKIPEVNFLILYYWSSKDYVADV--WNINYIIY*RP 283
           L +L+  N+F +++ +  PEVN ++ YY  ++  VA+V  WN+   +  RP
Sbjct: 109 LTKLLGANHFTFYDFKTDPEVNNVLRYYQETQ--VANVLPWNLPSNLVSRP 157


>SB_57595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 236 YVADVWNINYIIY*RPALASLRKH 307
           Y+ D+W + Y+IY  P  A LR+H
Sbjct: 144 YLKDLWPMLYLIYTTPLGAILRRH 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,510
Number of Sequences: 59808
Number of extensions: 320580
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)