Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0004
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 553 YEYMYGTYTKITFFYNFCLSV 491
           Y+Y Y  Y K  ++ N+ +++
Sbjct: 329 YKYNYNNYNKKLYYKNYIINI 349


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/32 (21%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 542 VRYIH*NNIFLQFLS-VCLFVPANLWNGCTDF 450
           V +++  ++F++  + +C+ +    W+GC  F
Sbjct: 235 VYFLNMASVFMRIFNLICMMLLIGHWSGCLQF 266


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 521 NIFLQFLS-VCLFVPANLWNGCTDF 450
           ++F++  + +C+ +    W+GC  F
Sbjct: 274 SVFMRIFNLICMMLLIGHWSGCLQF 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,028
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)