Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0001
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    30   1.4  
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   1.8  
01_06_1333 + 36385411-36385608,36385986-36386123                       29   3.1  
06_03_0143 + 17215975-17216745                                         28   7.2  

>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -2

Query: 572 LSAMQPLVMTCSVPCRAVRCEPVLPCGTSRGSMLSSACWAG-----ASMGSLRM*LKVAL 408
           LSAM+ L +  S+P  A R  PVL    S+G++LS  C  G     A+ G+ ++ +KV L
Sbjct: 616 LSAMKSLQILRSIPAPARRMLPVLT--NSQGAVLSIPCQPGVAEAIATFGTRQVEMKVPL 673

Query: 407 N 405
           +
Sbjct: 674 D 674


>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 184 FISRMNPYSPELNYFLSYQYCR 249
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>01_06_1333 + 36385411-36385608,36385986-36386123
          Length = 111

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 436 LPIDAPAQHADDSMDPLDVPQGSTGSQ 516
           LP D+  +HADD   PL + Q STGS+
Sbjct: 39  LPGDSDGRHADDKTQPLRL-QASTGSE 64


>06_03_0143 + 17215975-17216745
          Length = 256

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 520 CVVNQCFLVVRLEGPCCHQHAGQEHRWAVSACS 422
           C V  C+  VRL  P C   AG+  R    ACS
Sbjct: 202 CDVPFCYCRVRLRRPACAAPAGRAARRLEKACS 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,459,730
Number of Sequences: 37544
Number of extensions: 408304
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)