Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2397
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.36 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   0.63 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 214 PKPDINSAWCIDLLEASNVNSVTGTAGKMCRFLV 315
           P P  N   C DL+ + + +  +GT G +C   V
Sbjct: 228 PNPCQNGGTCHDLVNSFSCSCPSGTLGYICEINV 261


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 211 TPKPDINSAWCIDLLEASNVNSVTGTAGKMC 303
           +P P  N+  C+D +     N   G  GK C
Sbjct: 111 SPNPCRNNGSCVDRIADFECNCKNGWKGKTC 141


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = -2

Query: 190 KLRDTLNTNTIEVDNEIKFDIFQRDNIRHRAPRGICTLNNDILFKF*VKINMF 32
           K+++    N    D  IKF    + N+R  +  G   +  +++F     + M+
Sbjct: 706 KMQEQFTLNFRNSDELIKFISIAKHNVRTFSAGGFFDIRKNLIFSLIANVAMY 758


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 436 IRSRQVHNVRHIKDQLLADFIHVVSDFGLANTATNTPRIPTPKTDTFCRL 287
           +  +QV N RH    +   F+  +  FGL N           KT TFC L
Sbjct: 364 VMQQQVKNFRHSVRSVF--FLSEI--FGLVNLKYRETYFRLSKTKTFCTL 409


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 371 CRVRFRAREHRHKH 330
           CR RFR R H   H
Sbjct: 252 CRGRFRRRHHLVHH 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,216
Number of Sequences: 336
Number of extensions: 2986
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)