Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2397
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 29 2.6
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 29 2.6
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763... 29 2.6
11_06_0208 - 21268722-21268763,21269146-21269274,21269388-212695... 28 3.4
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 28 3.4
04_04_1655 - 35089916-35091157 28 4.5
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 27 5.9
03_05_0525 + 25200207-25200580,25201061-25201751 27 5.9
12_02_0643 - 21461123-21461902 27 7.8
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 241 CIDLLEASNVNSVTGTAGKMCRFLVLVFWVCLWRC 345
CI LL S ++ V +A K C +V+ W W C
Sbjct: 59 CIVLLHISLLSRVPNSAPKFCWLIVMPGWFSGWCC 93
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 356 RAREHRHKHTQNTNTKNRHILPAVPVTLFTLLA 258
R H H H + N + R I+P V + +F + A
Sbjct: 92 RTYHHHHHHNNSNNHRLRRIIPRVLLAVFAIYA 124
>08_02_0871 -
22075553-22075731,22075815-22076028,22076309-22076351,
22076557-22076616,22077522-22077593,22078163-22078368,
22078782-22078837,22079540-22079777,22079908-22080081,
22080157-22080292,22080822-22080853,22081563-22081619,
22081713-22081965,22082057-22082145,22082590-22082643,
22084016-22084207,22085338-22085499
Length = 738
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 402 SRISCWLILFMSCPISGSRTPPQTHPEYQHQKPT 301
SR+ C ++ + + RTPP PE Q +P+
Sbjct: 8 SRVKCTMLAVLCGKVGKQRTPPGPVPESQRPRPS 41
>11_06_0208 -
21268722-21268763,21269146-21269274,21269388-21269537,
21270402-21270773
Length = 230
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 371 CRVRFRAREHRHKHTQN 321
C VRFR EHR H QN
Sbjct: 195 CAVRFRTEEHRLLHVQN 211
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 439 VIRSRQVHNVRHIKDQLLADFIHVVSDFGLANTATNTPRIPTPKTDTFC 293
VI S + + + + L D HV+ FGL ++ + T TD+FC
Sbjct: 376 VITSNKPYGIHDGSNPLFDD--HVIPKFGLQKGGVHSGHVQTGITDSFC 422
>04_04_1655 - 35089916-35091157
Length = 413
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 417 ITSDISRISCWLILFMSCPISGSRTPPQTHPEYQH 313
IT D I WL+ +CP++ PP P H
Sbjct: 36 ITYDRDGIERWLLTAGTCPLTKQPVPPDCDPTPNH 70
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 359 FRAREHRHKHTQNTNTKNRHILPAVPVTLFTLLASRRSMHHALFISGFGVNCLFDKQTPR 180
FRA+ + NTN K + P V F + S ++ +G+ ++ FDK PR
Sbjct: 301 FRAKPVVDQDNNNTNNKKQ---PEVTTVFFCIPVSPGRCR-VIWANGYNLDGWFDKMIPR 356
Query: 179 YPKH 168
+ H
Sbjct: 357 WWLH 360
>03_05_0525 + 25200207-25200580,25201061-25201751
Length = 354
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 322 IPTPKTDTFCRLFPLHYLHYWLPEDRCTMHYLYLVLG*TVCLINKLRDTLNTNTIEVDN 146
+ + K L+P HY H+ ED C +LY T C +++L +T +I VDN
Sbjct: 302 LKSSKLQCLGNLYPKHYKHFAQHEDIC-QSFLY-----TPCWVDELPET----SISVDN 350
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 363 PISGS-RTPPQTHPEYQHQKPTHFAGCSRYTI 271
P+ G RTPP P P + GC R TI
Sbjct: 214 PLRGRPRTPPPPRPRPPTTPPRPYVGCPRLTI 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,811
Number of Sequences: 37544
Number of extensions: 282909
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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