Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2397
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09321-1|CAA70499.1|  801|Homo sapiens TBP associated factor pro...    30   4.8  
AY888049-1|AAX14898.1|  618|Homo sapiens TAFII105-E9 protein.          30   4.8  
AY888048-1|AAX14897.1|  862|Homo sapiens TAFII105 protein.             30   4.8  
AB234096-1|BAF51561.1|  867|Homo sapiens TATA box binding protei...    30   4.8  

>Y09321-1|CAA70499.1|  801|Homo sapiens TBP associated factor
           protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 EQPAKCVGFWCWYSGCVCGGVREPEIGHDMNKISQQLI 397
           E   KC  F        C G + PE+G ++ K+ +QL+
Sbjct: 191 ENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLL 228


>AY888049-1|AAX14898.1|  618|Homo sapiens TAFII105-E9 protein.
          Length = 618

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 EQPAKCVGFWCWYSGCVCGGVREPEIGHDMNKISQQLI 397
           E   KC  F        C G + PE+G ++ K+ +QL+
Sbjct: 257 ENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLL 294


>AY888048-1|AAX14897.1|  862|Homo sapiens TAFII105 protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 EQPAKCVGFWCWYSGCVCGGVREPEIGHDMNKISQQLI 397
           E   KC  F        C G + PE+G ++ K+ +QL+
Sbjct: 257 ENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLL 294


>AB234096-1|BAF51561.1|  867|Homo sapiens TATA box binding protein
           (TBP)-associated factor 4B protein.
          Length = 867

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 EQPAKCVGFWCWYSGCVCGGVREPEIGHDMNKISQQLI 397
           E   KC  F        C G + PE+G ++ K+ +QL+
Sbjct: 257 ENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLL 294


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,962,540
Number of Sequences: 237096
Number of extensions: 1612436
Number of successful extensions: 13944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13939
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)