Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2397
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 29 2.3
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 29 2.3
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 29 2.3
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 29 2.3
U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical pr... 27 5.3
U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical pr... 27 5.3
U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical pr... 27 5.3
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 27 5.3
Z82080-8|CAD92382.3| 404|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL032625-7|CAN86642.1| 404|Caenorhabditis elegans Hypothetical ... 27 9.2
AL023854-1|CAH60790.2| 404|Caenorhabditis elegans Hypothetical ... 27 9.2
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 375 FMSCPISGSRTPP-QTHPEYQHQKPTHFAGCSRYTIY 268
+++CP+S S+ PP YQHQ G R Y
Sbjct: 576 YLTCPVSASKRPPFDPSQVYQHQNTISNPGDDRARCY 612
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 375 FMSCPISGSRTPP-QTHPEYQHQKPTHFAGCSRYTIY 268
+++CP+S S+ PP YQHQ G R Y
Sbjct: 641 YLTCPVSASKRPPFDPSQVYQHQNTISNPGDDRARCY 677
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 375 FMSCPISGSRTPP-QTHPEYQHQKPTHFAGCSRYTIY 268
+++CP+S S+ PP YQHQ G R Y
Sbjct: 576 YLTCPVSASKRPPFDPSQVYQHQNTISNPGDDRARCY 612
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 375 FMSCPISGSRTPP-QTHPEYQHQKPTHFAGCSRYTIY 268
+++CP+S S+ PP YQHQ G R Y
Sbjct: 641 YLTCPVSASKRPPFDPSQVYQHQNTISNPGDDRARCY 677
>U97403-2|AAB52472.2| 649|Caenorhabditis elegans Hypothetical
protein T10E9.4 protein.
Length = 649
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 220 PDINSAWCIDLLEASNVNSVTGTAGKMCRF 309
P N C+D++E + V T G +CRF
Sbjct: 408 PLYNEPKCVDVVEGKESSGVCKTKGGVCRF 437
>U28993-3|AAT81196.1| 635|Caenorhabditis elegans Hypothetical
protein F22D3.2b protein.
Length = 635
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 363 PISGSRTPPQTHPEYQHQKPTH 298
P+S S TP + HP H++P H
Sbjct: 159 PLSRSTTPRKIHPYVIHEEPLH 180
>U28993-2|AAK31497.1| 720|Caenorhabditis elegans Hypothetical
protein F22D3.2a protein.
Length = 720
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 363 PISGSRTPPQTHPEYQHQKPTH 298
P+S S TP + HP H++P H
Sbjct: 159 PLSRSTTPRKIHPYVIHEEPLH 180
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 308 FWCWYSGCVCGGVREPEIGHDMNKISQQLILDMSDVMDLA 427
FWC CV EI H+ +KI +++ + +M+ A
Sbjct: 78 FWCAEVDCVHERCSTKEIPHEQSKIFEEISKECDHIMNSA 117
>Z82080-8|CAD92382.3| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 285 NSRQNVSVFGVGILGV 332
NSR NV V+GVG+LG+
Sbjct: 301 NSRGNVFVWGVGVLGM 316
>AL032625-7|CAN86642.1| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 285 NSRQNVSVFGVGILGV 332
NSR NV V+GVG+LG+
Sbjct: 301 NSRGNVFVWGVGVLGM 316
>AL023854-1|CAH60790.2| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 285 NSRQNVSVFGVGILGV 332
NSR NV V+GVG+LG+
Sbjct: 301 NSRGNVFVWGVGVLGM 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,379
Number of Sequences: 27780
Number of extensions: 264982
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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