Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2396
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0098 + 9148424-9148682,9148817-9148905                           28   3.8  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    28   5.0  
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    27   8.8  
03_06_0425 - 33847906-33848892                                         27   8.8  

>10_05_0098 + 9148424-9148682,9148817-9148905
          Length = 115

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 205 ERWREYGDGFLVLK-FTSCHHSFSFEYTYEKP 297
           ERWR+   G +V + F SCH    +EY +  P
Sbjct: 52  ERWRQDAAGNVVCRRFWSCHGCLCYEYDHIVP 83


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 126 HNKVPHLKLILSVAIKCVLFHCRNGW 203
           HN +P +  IL V I C LF+C   W
Sbjct: 37  HNGMPIMVSILVVVIICTLFYCVYCW 62


>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
            12560848-12561389,12561398-12564827
          Length = 1455

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 89   SQSEKRLINFDLS**SATS*INSECSDKMRSVSLSKRMVSDGEN 220
            S +E  L+   L+  S+   I+  CSDK R+ SLS   V +G+N
Sbjct: 1065 SSAEDGLLRIPLNLVSSLKKIHCSCSDKSRNFSLSS--VHNGKN 1106


>03_06_0425 - 33847906-33848892
          Length = 328

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 244 LTPKIHHRILAIAHHPFRQ 188
           L+ ++  R+L+ AHHPFR+
Sbjct: 12  LSTELSWRVLSFAHHPFRE 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998,936
Number of Sequences: 37544
Number of extensions: 210427
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)