Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2396
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    26   0.20 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    26   0.20 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.4  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 426 IHTSLGVISAGQSMTIIISHQKSRKIIQSFTRNNTQSNETKKLWFLVSVFKTE 268
           +H   G IS   ++ +  +H+K  KII  F  N+T        WF +S+   E
Sbjct: 92  VHPIFGTISDLDNL-VSAAHEKGLKIILDFVPNHTSDQHE---WFQLSLKNIE 140


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 426 IHTSLGVISAGQSMTIIISHQKSRKIIQSFTRNNTQSNETKKLWFLVSVFKTE 268
           +H   G IS   ++ +  +H+K  KII  F  N+T        WF +S+   E
Sbjct: 92  VHPIFGTISDLDNL-VSAAHEKGLKIILDFVPNHTSDQHE---WFQLSLKNIE 140


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 408 VISAGQSMTIIISHQKSRKIIQSFTRNNTQSNETKKLWFLVS 283
           +IS+  + TI  ++  +     ++  NN   N  KKL++ ++
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNIN 122


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 378 IISHQKSRKIIQSFTRNNTQSNETKKLWFLVS 283
           IIS   ++ I  +   NN   N  KKL++ ++
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYNIN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,706
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)