Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2395
         (483 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1Z6F4 Cluster: CG30437-PC, isoform C; n=18; Pancrustac...    38   0.090
UniRef50_Q81K30 Cluster: Techoic acid ABC transporter, efflux pe...    35   1.1  
UniRef50_UPI00004E00FA Cluster: transforming acidic coiled coil ...    32   7.8  

>UniRef50_A1Z6F4 Cluster: CG30437-PC, isoform C; n=18;
           Pancrustacea|Rep: CG30437-PC, isoform C - Drosophila
           melanogaster (Fruit fly)
          Length = 855

 Score = 38.3 bits (85), Expect = 0.090
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 316 WWQAGTATPFRET--GSNAFSSTHGLVQTHPS 405
           +WQ   ATP   T   S  FS+THGLVQTHPS
Sbjct: 55  FWQQHVATPSSSTPFDSPFFSATHGLVQTHPS 86


>UniRef50_Q81K30 Cluster: Techoic acid ABC transporter, efflux
           permease, putative; n=2; Bacillus cereus group|Rep:
           Techoic acid ABC transporter, efflux permease, putative
           - Bacillus anthracis
          Length = 268

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 313 MPMWTWSSAALMASFFRLGTTLTPIASSVTRHKNRVSKQYLPLHPMLTHKV 161
           +P + W    L+  FF +GTT+T  A+S+    N VSK   PL  + T+ V
Sbjct: 68  VPYFVWLVCGLVTWFF-VGTTITQSANSIYSRLNTVSKMNFPLSIIPTYVV 117


>UniRef50_UPI00004E00FA Cluster: transforming acidic coiled coil 2;
           n=2; Takifugu rubripes|Rep: transforming acidic coiled
           coil 2 - Takifugu rubripes
          Length = 3058

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 257 DHSHTNCKFRH*AQEQSQ*TVSSTAPHVNTQSLMP 153
           DH+HT+C   H  +E +Q   +  A  +N+Q++ P
Sbjct: 518 DHNHTSCSVNHCTEENTQDDRNGNAGVINSQNIPP 552


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,174,473
Number of Sequences: 1657284
Number of extensions: 7633081
Number of successful extensions: 17890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17889
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)