Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2395
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical p...    27   5.4  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   7.1  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   7.1  

>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 261 WGPLSHQLQVPSLGTRTESVNSIFHCTPC*HTKSDASNDIT-INASRSAFADIKFELILT 85
           W   S   +     +  ES+N +FH T   H K   S+ ++ I+A+RS  +D + E +++
Sbjct: 668 WKSYSRPQETILFSSLQESINVLFHRTESQHGKLLVSHALSYISAARSGISDSEVEDLIS 727


>Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical
           protein T21B4.1 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 295 SSAALMASFFRLGTTLT-PIASSVTRHKNRVSKQYLPLHPMLTH 167
           S   L+A F  L + LT PI   V R KN+  +Q  P++P+L H
Sbjct: 6   SITILLAIFASLLSLLTFPIYFKVFR-KNKAKEQESPIYPILQH 48


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 295 SSAALMASFFRLGTTLTPIASSVTR--HKNRVSKQYLPLHPMLTH 167
           + A L+  FF+  TT+ P    V +  HK +  K + P++P+L H
Sbjct: 277 AEAVLLDQFFK--TTIEPTYPPVHQQLHKEQDVKYFAPINPVLPH 319


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 295 SSAALMASFFRLGTTLTPIASSVTR--HKNRVSKQYLPLHPMLTH 167
           + A L+  FF+  TT+ P    V +  HK +  K + P++P+L H
Sbjct: 277 AEAVLLDQFFK--TTIEPTYPPVHQQLHKEQDVKYFAPINPVLPH 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,550
Number of Sequences: 27780
Number of extensions: 183500
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)