Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2394
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0112 - 876213-876857,877245-877622,877707-877813,878271-87...    28   6.1  

>06_01_0112 -
           876213-876857,877245-877622,877707-877813,878271-878319,
           880413-880637,880741-880935
          Length = 532

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 94  EYCLEINDLFF*VISISRLCF-PNLFNLYEIKQFRYNREQNNLEQ--RKHK*CS*DNILI 264
           E  L  N L     +IS   F P  FN +  K  R N++ NNL Q  +K    + +++ +
Sbjct: 243 EPALPFNPLAARAATISLSAFGPFGFNFFNGKGKRQNKKLNNLNQSNKKPSNPNQNSMKV 302

Query: 265 CQ*SFFLFIY 294
           C  SF LF +
Sbjct: 303 CPHSFLLFSF 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,551
Number of Sequences: 37544
Number of extensions: 210672
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)