Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2394
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical p...    31   0.58 
Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical pr...    31   0.58 
U40797-6|AAB37547.1|  235|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    28   5.4  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    28   5.4  
AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine re...    27   7.2  
AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z81017-12|CAD91635.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 55  RSPVTRTLNKR*FEYCLEINDLFF*VISISRLCFPNLFNLYEIKQFRYNREQN 213
           R   T  L+   F Y   ++ LFF ++    +C  +L  LYEI + R+N  Q+
Sbjct: 197 RISTTEILSTYRFVYHSILDPLFFNIVPFMWMCIFSLLTLYEIYKSRHNTYQH 249


>Z78537-3|CAD91626.1|  394|Caenorhabditis elegans Hypothetical
           protein C09F12.3 protein.
          Length = 394

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 55  RSPVTRTLNKR*FEYCLEINDLFF*VISISRLCFPNLFNLYEIKQFRYNREQN 213
           R   T  L+   F Y   ++ LFF ++    +C  +L  LYEI + R+N  Q+
Sbjct: 197 RISTTEILSTYRFVYHSILDPLFFNIVPFMWMCIFSLLTLYEIYKSRHNTYQH 249


>U40797-6|AAB37547.1|  235|Caenorhabditis elegans Hypothetical
           protein C28C12.4 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 280 KSSIDKLK-YYPKSIICVFFVQGYFVRG 200
           K +ID LK  YP+ I  +FF+ G F RG
Sbjct: 137 KEAIDNLKTQYPQEIPALFFISGSFRRG 164


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 433 TSVCSFYPLPSGPGINFFYRVFTKILCHS 519
           + VC   P   G   N FYR+FT +  H+
Sbjct: 690 SGVCGMVPFFFGDNPNQFYRLFTSLFVHA 718


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 433 TSVCSFYPLPSGPGINFFYRVFTKILCHS 519
           + VC   P   G   N FYR+FT +  H+
Sbjct: 435 SGVCGMVPFFFGDNPNQFYRLFTSLFVHA 463


>AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine
           receptor, class t protein70 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 313 LRLLAVCR*TKKSSIDKLKYYPKSIICVFFV 221
           + LLAVCR    S+I   K +P SI C  F+
Sbjct: 104 MTLLAVCRILIFSNIINSKKFPNSIKCALFL 134


>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 439 VCSFYPLPSGPGINFFYRVFTKILCHS 519
           +C   P  SG   N  YR+FT +  H+
Sbjct: 570 ICGMIPFFSGDNPNQIYRLFTSLFIHA 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,653
Number of Sequences: 27780
Number of extensions: 217707
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)