Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2394
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.13 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 245 EHYLCFLCSRLFCSR-LYLNCLISYRLNRLG 156
           E Y C +C R++CSR   +  + +Y  +R G
Sbjct: 34  EEYRCVICERVYCSRNSLMTHIYTYHKSRPG 64


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 SIYMRLNNLGITANKITLNKENTNNALRIIF*FVNRAFFC 286
           S+ ++ N        ITLN E+T+N + +I     R FFC
Sbjct: 99  SLTVKKNFANKYCGNITLNIESTSNKMTVILTPPGR-FFC 137


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 380 LTNSLRLSPVTSPPHSMKLV*PLKV 306
           LTN  R   +T PP  +  + P+ V
Sbjct: 17  LTNDCRYDKMTRPPGEINSINPINV 41


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 24  SVSVTRSHVSSFTSHTDS 77
           + +V R+H+S  T+H DS
Sbjct: 255 TATVNRNHLSGGTNHWDS 272


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 185 NNLGITANKITLNKENTNN 241
           NN  ITA     N  N NN
Sbjct: 224 NNSTITAGNANTNASNNNN 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,238
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)