Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2393
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   3.5  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   3.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.1  

>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -2

Query: 162 DSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLN 55
           + +  P H + +F++ H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -2

Query: 162 DSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLN 55
           + +  P H + +F++ H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 118 EEEYQLDMMRRLRRVNVDHFH 180
           EEE++L   R    +N+ H+H
Sbjct: 189 EEEHRLAYFREDLGINLHHWH 209


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 315 ESSG*FLCIVNH 280
           E SG +LC+VN+
Sbjct: 300 EDSGKYLCVVNN 311


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 114 HGVVMLWKWEAVGNLQ 67
           +G +M+ +WE V N+Q
Sbjct: 598 NGALMINQWENVTNIQ 613


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 114 HGVVMLWKWEAVGNLQ 67
           +G +M+ +WE V N+Q
Sbjct: 598 NGALMINQWENVTNIQ 613


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,729
Number of Sequences: 336
Number of extensions: 2600
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)