Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2393
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    87   1e-18
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   0.51 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.90 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.1  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   2.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.8  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
 Frame = +1

Query: 139 MMRRLRRVNVDHFHVGWYQSADVGNFLSLSL-LESQYHYQTSIEESVVVIYDTKKSARGF 315
           M+ RL+ +     HVGWY  A V +FLS    +E+QY YQ +   S+  +YD  +S+ G 
Sbjct: 91  MLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGT 150

Query: 316 LTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTE 492
           L ++AY+LTP+ +A ++E  +T  +L +  +   N+  E+PIVI NS L   ++  L+E
Sbjct: 151 LYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLSE 209


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +1

Query: 52  VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 219
           + +NRLE  N F FP  D      +   EY   M R+L  +NV    VG  +S  + ++ 
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62

Query: 220 SLSLL 234
           +L L+
Sbjct: 63  NLMLV 67


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 141  HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 52
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 19  MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 168
           M+  +  L GLV +    +T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 262 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 414
           + + +VV YD K  +  F  L+A   TP+      E   TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 349 AIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 447
           AIA+ ++G +T    RN KI +   ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 79   W*SPDGSQRPNQGELPEPPP 20
            W + DGS   NQ   P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 379  CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 293
            CN + C  Q   +   SN +P  +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,836
Number of Sequences: 5004
Number of extensions: 45118
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)