Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2393
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 136 1e-32
10_01_0269 - 2865731-2865752,2866627-2868605 30 1.2
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 2.7
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 3.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 4.8
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 8.4
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 27 8.4
05_01_0126 + 858259-858489,858641-859189,859545-860162 27 8.4
03_05_0219 - 22059388-22059729,22059838-22059999 27 8.4
02_05_0557 + 29946273-29946497,29946899-29947465,29947898-299479... 27 8.4
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 136 bits (328), Expect = 1e-32
Identities = 68/155 (43%), Positives = 98/155 (63%), Gaps = 4/155 (2%)
Frame = +1
Query: 34 GALLGLVVENRLEITNCFPFPKHDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSA 201
G LLGL V + LE+TNCFPFP +D D YQL+MMR LR VNVD+ VGWYQS
Sbjct: 59 GQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSC 118
Query: 202 DVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYT 381
+G+F ++ L+E+ +YQ +I V ++YD +S +G L LKA +LT + +Y+ T
Sbjct: 119 LLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLT 178
Query: 382 PEALRNLKIGYENLFIEVPIVIRNSPLTNIMISEL 486
E LR K+ + ++F E+PI + NS L + ++EL
Sbjct: 179 GEKLREKKLSWVDIFEEIPIKVSNSALVSAFMTEL 213
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 205 HLHSGTIQHENDQH*LFEASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEP 26
HL SGTIQ E+ ++ + +SS P H H++ + + G R EP
Sbjct: 294 HLASGTIQ-EHSRYSVGSSSSKNSAAAPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEP 352
Query: 25 P 23
P
Sbjct: 353 P 353
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 336
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 21 GGGSGSSPWFGR*EPSGDYQLLP 89
GGG GS WF R SG LLP
Sbjct: 47 GGGGGSGGWFSRLVASGASLLLP 69
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +3
Query: 144 EEASKSQC*SFSCWMVPECRCRQFSKPFVIRVTISLSDLY*GECCRDLRYKEISQRILDF 323
+E S++ SF C + E + +T +L + G C +L + I+ R++
Sbjct: 1892 KEMSRNVSESFYCLVCSEADALSDEHKSLASITYNLIE---GNKCGNLLVELIASRLILD 1948
Query: 324 EGLSFDTSGYCYVQGRRLHSG 386
L + SGYC+ H G
Sbjct: 1949 VHLQAEASGYCFESEPGSHDG 1969
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 6 IMQQHGGGSGSSPWFGR 56
+ QQ GGG SSPW+ R
Sbjct: 34 VQQQDGGGFKSSPWYVR 50
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 189 PSNMKMINIDSSKPPHHVQLVFLLIHGVVMLWKWE 85
P++ +++ S KP + L ++L G + L +W+
Sbjct: 339 PASTSKLDVHSQKPNQSMTLAYVLFRGSMKLLQWD 373
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 103 HALEMGSSW*SPDGSQRPNQGELPEPPPCC 14
H+ S S QR ++ + P PPPCC
Sbjct: 280 HSRSRSSEGSSSGQHQRQSRWDQPPPPPCC 309
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 259 RSDSDIVTLITKGLENCLHLHSG 191
R+ D+V L+ + LENC H ++G
Sbjct: 45 RAALDVVELVVRELENCPHYNAG 67
>02_05_0557 +
29946273-29946497,29946899-29947465,29947898-29947961,
29948400-29948480,29948604-29948818,29948936-29949106
Length = 440
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 223 GLENCLHLHSGTIQHENDQH*LFEASSSCPTG 128
G NC L G D H LF+ SSCP G
Sbjct: 8 GQRNCQQLGGGVFG--GDAHHLFDEISSCPRG 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,920
Number of Sequences: 37544
Number of extensions: 318047
Number of successful extensions: 874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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