Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2393
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   123   6e-29
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    41   6e-04
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   1.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   1.9  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   1.9  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   1.9  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    27   10.0 
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro...    27   10.0 
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  123 bits (297), Expect = 6e-29
 Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 14/170 (8%)
 Frame = +1

Query: 22  EVAQGALLGLVV--ENRLEITNCFPFPKHDDTMDEE-----EYQ-------LDMMRRLRR 159
           +   G L GLV   ++RLEITNCFP  +++  MD++     +Y+       LDM+R+ R 
Sbjct: 43  DACAGVLTGLVFLEDSRLEITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRT 102

Query: 160 VNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRL 339
           +N+D+  VG+YQS   G   S  L+ES + YQ    E+VV+IYD  K+ +G L+L+A+RL
Sbjct: 103 MNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRL 162

Query: 340 TPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELT 489
           +  A+ +  + D+ PE ++   + Y+N+F E+PI+I++S L N+++SEL+
Sbjct: 163 STAALDLASKNDWRPELVKAAGLTYQNMFEELPIIIKSSYLNNVLMSELS 212


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 13  SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 183
           +  E   G L+G   +  +++TNCF  P    +DD   ++++   M+  L++ + +   V
Sbjct: 32  TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91

Query: 184 GWYQSADVGNFLSLSLLESQYHYQTSIEES 273
           GW+ +    +  S  L+   Y+ +   E S
Sbjct: 92  GWFLT--TSDITSSCLIYHDYYVRVITEAS 119


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 256 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLFI 429
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP+   ++ + ++   +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534

Query: 430 EVPIVIRNSPLTNI 471
            V ++     + NI
Sbjct: 535 PVSMMSTTVNVENI 548


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 171 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 19
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 171 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 19
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 171 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 19
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
           protein F52E10.1 protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 22  EVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWY 192
           +V  G    + + ++ + T   PFPKH  T    ++  D + +L R    H +VG Y
Sbjct: 89  KVCDGIHSSIKLVSQRDQTGPAPFPKHKLTCAHCDWSFDNVMKLVRHRGVHKNVGVY 145


>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
           protein protein.
          Length = 1203

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 22  EVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWY 192
           +V  G    + + ++ + T   PFPKH  T    ++  D + +L R    H +VG Y
Sbjct: 89  KVCDGIHSSIKLVSQRDQTGPAPFPKHKLTCAHCDWSFDNVMKLVRHRGVHKNVGVY 145


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 234 RVTISLSDLY*GECCRDLRYKEISQRILDFE 326
           RV   +++LY  +C  D R  + + RI DFE
Sbjct: 111 RVKEEMAELYRSKCQNDQRLIDANHRIADFE 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,059
Number of Sequences: 27780
Number of extensions: 262372
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)