Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2392
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA448 Cluster: hypothetical protein TTHERM_0049...    34   2.6  
UniRef50_A7PS39 Cluster: Chromosome chr14 scaffold_27, whole gen...    33   5.9  

>UniRef50_UPI00006CA448 Cluster: hypothetical protein
           TTHERM_00497080; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00497080 - Tetrahymena
           thermophila SB210
          Length = 1797

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 44  LIESTIIKAGNVTFGQ-LLVNQKNELLTLYSIGSHKTLLNNILVK*QVKY*PLFN 205
           LI  T   +G   F Q LL+N +NE + L+ IGS+K + N IL+    +Y  L N
Sbjct: 148 LIFLTTTYSGIYVFEQMLLLNNQNEQVFLFEIGSYKQMQNTILMTSDGQYLVLLN 202


>UniRef50_A7PS39 Cluster: Chromosome chr14 scaffold_27, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr14 scaffold_27, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 681

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 261 LTYQ*HFFVQMHRLPPLIIDDSITKPKCRIDEIDFLPLET*SAPKDYRISSDLC 422
           +++  +FF     LPP+I+DDS       I   +  P     AP DY ++S LC
Sbjct: 498 ISFNSYFFRGYLNLPPIIVDDSTKSRFLNIVAYEMCP----DAPDDYTVTSYLC 547


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,615,215
Number of Sequences: 1657284
Number of extensions: 9976860
Number of successful extensions: 17702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17697
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)