Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2392
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.5  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  TNTK*NGPLIESTIIKAGNVTFGQLLVNQKNELLTLY 130
           TN K + P+I   I++  N    QL V+Q   L TLY
Sbjct: 770 TNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLY 806


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 465 QTKKFIICKNGKKSNINRKIFCSLLALIMSREVRNLFHLCD 343
           +TKK  +  + K  N N K+FC  L       + NLF  C+
Sbjct: 869 RTKKEELDGHKKLVNPNTKVFCLYLVSFSYSIISNLFLGCE 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,411
Number of Sequences: 5004
Number of extensions: 45691
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)