Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2392
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   5.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 228 KEYGSKPALNKG*YLTCYLTKMLFRRVL*LPMEY--KVNNSFF 106
           K++GS+P       LTC   KM FRRV+   +EY  K +N+ F
Sbjct: 60  KDFGSQPKQ----VLTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 189  YLTCYLTKMLFRRVL*LPMEYK 124
            YL CY T+  ++ +L LP+ Y+
Sbjct: 3926 YLDCYFTRAFYKHILNLPVRYQ 3947


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 498 AYSFI*SSLLKQTKKFIICKNGKK-SNINRKIFCSLLALIMSREV 367
           AYS I S+LL+     ++C  G K  NI  +I  +L A+   R +
Sbjct: 444 AYSLIRSALLEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRI 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,348
Number of Sequences: 27780
Number of extensions: 253513
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)