Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2391
(529 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 62 6e-09
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 44 0.002
UniRef50_A6GKA1 Cluster: Putative regulatory protein; n=1; Plesi... 35 1.0
UniRef50_Q2J5C5 Cluster: Putative uncharacterized protein; n=1; ... 34 1.8
UniRef50_Q6NC61 Cluster: Putative uncharacterized protein; n=4; ... 34 2.3
UniRef50_Q88RX4 Cluster: Putative uncharacterized protein lp_368... 33 4.1
UniRef50_Q2IG13 Cluster: Putative uncharacterized protein; n=1; ... 33 4.1
UniRef50_A6UXC2 Cluster: Lipoprotein, putative; n=5; Pseudomonas... 33 4.1
UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3; Xenopus|... 33 5.4
UniRef50_A5UQF2 Cluster: Glycosyl transferase, group 1; n=2; Ros... 33 5.4
UniRef50_O61673 Cluster: Potassium channel modulatory factor; n=... 33 5.4
UniRef50_UPI00006A2F06 Cluster: dynein heavy chain domain 3; n=2... 32 7.1
UniRef50_Q2JF04 Cluster: Twin-arginine translocation pathway sig... 32 7.1
UniRef50_A6C482 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_Q016K6 Cluster: Chromosome 06 contig 1, DNA sequence; n... 32 7.1
UniRef50_Q4RTZ9 Cluster: Chromosome 12 SCAF14996, whole genome s... 32 9.4
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1076
Score = 62.5 bits (145), Expect = 6e-09
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = -3
Query: 209 RQSVLEAWSRRLADPSAGLRTVEAICPVLADWVGRDRGSLT 87
R+SVLE+WSRRLA+P+ GLRTVEA+ PV DWV R G LT
Sbjct: 909 RRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLT 949
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera|Rep:
Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -3
Query: 209 RQSVLEAWSRRLADPSAGLRTVEAICPVLADWVGRDRGSLT 87
R+ + W RRL AG RT+ AICPV W+ R G++T
Sbjct: 886 REEAVSKWQRRLRQTRAGARTIGAICPVFMAWLRRRHGAVT 926
>UniRef50_A6GKA1 Cluster: Putative regulatory protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative regulatory
protein - Plesiocystis pacifica SIR-1
Length = 929
Score = 35.1 bits (77), Expect = 1.0
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 90 ETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCAR-ARRLVG 266
E AVA VR+ R L AG+R R + R L+H LPILE R R A +L+
Sbjct: 869 EHVAVAETEVRKARL-LLAARPAGQRSRDSARKLLEHALPILERERPNSDTIRLAAKLLK 927
Query: 267 DC 272
+C
Sbjct: 928 NC 929
>UniRef50_Q2J5C5 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. CcI3|Rep: Putative uncharacterized protein -
Frankia sp. (strain CcI3)
Length = 248
Score = 34.3 bits (75), Expect = 1.8
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = -2
Query: 489 DRSSKVFSIVTTVAPPFKPKY-----TTASRQK*AG*WYPCGRWHYTEHPSGATSLPTRT 325
D+ +V ++T+ P + +T R+ AG W P GR HY ++P G + P R
Sbjct: 76 DQHGRVIDVLTSTPVPAATRRLPAGSSTGRRRMGAGVWAPPGRGHYRQNP-GLPADPRRA 134
Query: 324 SPR-CDAAARDRSYS 283
+P C + A + + S
Sbjct: 135 APEACHSGAENAATS 149
>UniRef50_Q6NC61 Cluster: Putative uncharacterized protein; n=4;
Alphaproteobacteria|Rep: Putative uncharacterized
protein - Rhodopseudomonas palustris
Length = 145
Score = 33.9 bits (74), Expect = 2.3
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -2
Query: 360 HPSGATSLPTRTSPRCDAAARDRSYSMIPHSLLRGG 253
HP G T PRCDA+ RSYS H LLR G
Sbjct: 20 HPEGGHYRETFRDPRCDASG--RSYSTAIHFLLRAG 53
>UniRef50_Q88RX4 Cluster: Putative uncharacterized protein lp_3683;
n=1; Lactobacillus plantarum|Rep: Putative
uncharacterized protein lp_3683 - Lactobacillus
plantarum
Length = 322
Score = 33.1 bits (72), Expect = 4.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 82 PEVRLPRSRPTQSARTGQIASTVRRPADGSAK 177
P V+ P+S PT+ A+T Q ++ +PA AK
Sbjct: 88 PTVQTPKSTPTRQAKTSQATTSAAKPATSKAK 119
>UniRef50_Q2IG13 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
uncharacterized protein - Anaeromyxobacter dehalogenans
(strain 2CP-C)
Length = 346
Score = 33.1 bits (72), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 393 WYPCGRWHYTEHPSGATSLPTRTSPRCDAA 304
W+P G WH T+ G S P R C+AA
Sbjct: 86 WHPGGAWHPTDLAPGLASEPARLRRACEAA 115
>UniRef50_A6UXC2 Cluster: Lipoprotein, putative; n=5; Pseudomonas
aeruginosa|Rep: Lipoprotein, putative - Pseudomonas
aeruginosa PA7
Length = 145
Score = 33.1 bits (72), Expect = 4.1
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 144 DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLVGDC 272
DG EAGRR R RP+L+ L +L R G AR+ C
Sbjct: 101 DGFEAGRRYRLEVRPQLRRALALLSDER-GAVVARSNFQTSRC 142
>UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3;
Xenopus|Rep: Tyrosine kinase receptor - Xenopus laevis
(African clawed frog)
Length = 1369
Score = 32.7 bits (71), Expect = 5.4
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 276 VSLNNCDRALRRRSAATFSWVRTWHQTGAPYSAIDRTGTITLPISAVK 419
V LNN ++A+R TFS R +T A Y+ I R+G +TL + AV+
Sbjct: 782 VILNNGEKAIRSACKGTFSPDRIVCRTPA-YTYIGRSGNLTLELDAVQ 828
>UniRef50_A5UQF2 Cluster: Glycosyl transferase, group 1; n=2;
Roseiflexus|Rep: Glycosyl transferase, group 1 -
Roseiflexus sp. RS-1
Length = 380
Score = 32.7 bits (71), Expect = 5.4
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 210 ILEPPRSGCTCARARRLVGDCEVSLNNCDRALRRRSAATFSWVRTWHQTGAPYS 371
+++P G A R++ D + D RR AATFSW RT +T A Y+
Sbjct: 325 LIDPDDPGALAAAIDRVLADTALRAALSDAG--RRRAATFSWQRTAEETLAVYA 376
>UniRef50_O61673 Cluster: Potassium channel modulatory factor; n=1;
Aplysia californica|Rep: Potassium channel modulatory
factor - Aplysia californica (California sea hare)
Length = 354
Score = 32.7 bits (71), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 149 TVEAICPVLADWVGRDRGSLTSGYLCRLTFYH 54
T E +CP+ A G D +T ++C LT H
Sbjct: 20 TTEVVCPICASLPGGDPNHVTDDFMCHLTVEH 51
>UniRef50_UPI00006A2F06 Cluster: dynein heavy chain domain 3; n=2;
Xenopus tropicalis|Rep: dynein heavy chain domain 3 -
Xenopus tropicalis
Length = 4253
Score = 32.3 bits (70), Expect = 7.1
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 210 ILEPPRSGCTCARARRLVGDCEVSLNNCDRALRRRSAATFSWVRTW-HQTGAPYSAIDRT 386
+LE P C R + + L NC AL++ S+ WV+ W Q S I T
Sbjct: 1500 LLEGPVEAWLCDIERTMRWTLKELLRNCRLALKKMSSKRDKWVKEWAGQMLITSSQIQWT 1559
Query: 387 GTITLPISAVKQ 422
+T + A K+
Sbjct: 1560 ADVTKSLMAAKE 1571
>UniRef50_Q2JF04 Cluster: Twin-arginine translocation pathway
signal; n=3; Frankia|Rep: Twin-arginine translocation
pathway signal - Frankia sp. (strain CcI3)
Length = 880
Score = 32.3 bits (70), Expect = 7.1
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 PRS-RPTQSARTGQIASTVRRPADGSAKRRDHASSTD 204
PRS RP++SAR G +AS V DG++ RR + D
Sbjct: 66 PRSARPSRSARPGNVASGVTYADDGASARRSPGGTGD 102
>UniRef50_A6C482 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 152
Score = 32.3 bits (70), Expect = 7.1
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -3
Query: 185 SRRLADPSAGLRTVEAICPVLADWVGRDRGSLTSGY 78
S++ ADPSAGL T+EAI + +G D L GY
Sbjct: 103 SKQFADPSAGLATIEAIY-IAYHLMGLDTTGLLEGY 137
>UniRef50_Q016K6 Cluster: Chromosome 06 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 06 contig 1, DNA
sequence - Ostreococcus tauri
Length = 263
Score = 32.3 bits (70), Expect = 7.1
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 63 CESAQVAGGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHG 203
CE A G V H E +D +G E GR + TR RLQ G
Sbjct: 199 CEEAGSQGARQERVCCH--HEGYSDCEEGCEEGRGAEEATRGRLQEG 243
>UniRef50_Q4RTZ9 Cluster: Chromosome 12 SCAF14996, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 12 SCAF14996, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1451
Score = 31.9 bits (69), Expect = 9.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 375 WHYTEHPSGATSLPTRTSPRCDAAARDRSYSMIPHSLLRGGAP*RKCSRSAGAPIS 208
+HY +H SG +++PTR P+ ++ RS P L G R S++ P S
Sbjct: 895 FHYVDHFSGTSTVPTRKPPKLSSSRGSRSK---PSELKLGKEQSRLASKALNPPQS 947
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,861,187
Number of Sequences: 1657284
Number of extensions: 9537888
Number of successful extensions: 32678
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 31423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32667
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -