Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2391
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   2.3  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   4.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.0  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   5.3  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.2  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   9.2  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 449 PHPSNRNTPLLHGRNRQGDGTRAVDGTIRS 360
           PHP N    LL G N Q D +  ++  IR+
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRT 126


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 110 GRDRGSLTSGYLCRLTFYHHANF 42
           G  RG      +CRL F HHA F
Sbjct: 226 GDYRGGYFYAGVCRLVFVHHATF 248


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 431 FGLKGGATVVTILKTLELLSQRCVVPFTLVDVY 529
           FGL     V  + K + L+SQ  VVP  L+ VY
Sbjct: 267 FGLINAFQVKQLHKVIPLVSQSTVVPKRLLKVY 299


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 86  SGYLCRLTFYHHANFLPQQILP 21
           S  L  L FYHH +F+P +  P
Sbjct: 157 SANLNALNFYHHFDFVPHESSP 178


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
          L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 65 TFYHHANFLPQQIL 24
          TF HHAN  P++IL
Sbjct: 14 TFAHHANLTPRKIL 27


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 VGDCEVSLNNCDRALRRRSAATFSWVRTWHQT 356
           VGD  +S  N D   + R+AAT  WV + H+T
Sbjct: 363 VGDQFLSAGNND--YKARAAATTVWVSSPHET 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,701
Number of Sequences: 5004
Number of extensions: 34082
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)