Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2391
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0371 - 3284103-3284582 31 0.57
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796... 29 1.7
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 2.3
01_01_0756 - 5836872-5838614 29 2.3
10_02_0152 - 5902554-5903058,5904171-5904670 29 3.1
05_01_0439 - 3477600-3477703,3480136-3480472 28 4.0
10_08_0454 - 18049817-18050305 28 5.3
01_02_0098 - 11087875-11089110,11091744-11092022 28 5.3
12_02_1120 - 26228618-26229403 27 7.1
11_01_0463 + 3594527-3594862 27 7.1
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 27 7.1
09_01_0137 + 2063881-2063934,2066218-2066448,2066656-2067249,206... 27 9.3
05_04_0129 - 18283862-18284328,18284382-18284580 27 9.3
01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397... 27 9.3
>08_01_0371 - 3284103-3284582
Length = 159
Score = 31.1 bits (67), Expect = 0.57
Identities = 31/99 (31%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Frame = +3
Query: 84 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGC-TCARARRL 260
GGE A A+ R A+ R VR+ R G P + P R C T RA
Sbjct: 32 GGEAEASASQAWRRGDANVHSDVRVRRGVRRPLRRTATGGAPPMLPQRKRCPTNRRAMLR 91
Query: 261 VGDCEVSLNNC----DRALRRRSAATFSWVRTWHQTGAP 365
G NC A R SA T R W AP
Sbjct: 92 RGGARSGPLNCMASPSSATSRASAMTMR--RWWSSASAP 128
>07_01_0943 -
7959813-7960113,7960193-7960363,7960446-7961278,
7961360-7961821,7961899-7962606
Length = 824
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 54 VVKCESAQVAGGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSG 233
+VKC+ + G+ +A P R A + ++AG+ VR + L G+P++E
Sbjct: 541 LVKCQKRERGKGKVGELAPEPKRGKAATLMPVSKAGKVVRALAQFEL--GMPLVEDNVLA 598
Query: 234 CTCARARRLVGDCEVSLNNCDRALRRRS 317
R L + L+N R +R S
Sbjct: 599 VMGIACRELHKQ-YMELSNAKRKMRESS 625
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 99 AVAAHPVRENRADRL--DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLV 263
A A P EN + ++ D GR +T P QH L E SGCTC R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>01_01_0756 - 5836872-5838614
Length = 580
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 116 WVGRDRGSLTSGYLCRLTFYHHANFLPQQILPATTQTT 3
WV RG++T+ + RLTF H Q A QTT
Sbjct: 414 WVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQAINQTT 451
>10_02_0152 - 5902554-5903058,5904171-5904670
Length = 334
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 385 VRSMALYGAPVWCHVLTHENVXXXXXXXXXSQLFNDTSQSPT 260
VR +G+P+W H+L + N + D ++PT
Sbjct: 197 VRECTYFGSPIWDHILGYWNASKVKPDNVLILKYEDMKRNPT 238
>05_01_0439 - 3477600-3477703,3480136-3480472
Length = 146
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 45 VCMVVKCESAQVAGGETSAVAAHPVRENRADRLDGTEAGRRVRQTT 182
+C V+ +A+VAG + P R N ADR G + G +Q T
Sbjct: 74 LCAVMLSNTARVAGIKPEVAITIPKRCNMADRPVGYKCGGHSQQPT 119
>10_08_0454 - 18049817-18050305
Length = 162
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 446 HPSNRNTPLLHGRNRQGDGTRAVDGTI 366
H R TP HGR G G RAV+ T+
Sbjct: 95 HRRIRITPSEHGRRGGGGGRRAVEATV 121
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 91 RLPRSR-PTQSARTGQIASTVRRPADGS 171
RLP+S+ P + AR Q AS RRP DG+
Sbjct: 12 RLPQSQAPRRQARGLQYASPERRPLDGA 39
>12_02_1120 - 26228618-26229403
Length = 261
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 84 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPP 224
GGE AA P R + + T R R+ +R H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>11_01_0463 + 3594527-3594862
Length = 111
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Frame = +3
Query: 69 SAQVAGGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPR-----LQHGLPILEPPRSG 233
S +V G +A A E R R T +G R + R L+ G +
Sbjct: 16 STRVREGYRAATQAGVEEEKRGGRTGATASGDRWEERPTARRDRLGLEPGKEMERRRSES 75
Query: 234 CTCARARRLVGDCEVSLNNCDRALRRRSAATFSWV 338
+ RARRL G C +A R +W+
Sbjct: 76 LSAPRARRLPGTCNGEEGGGGKAARTEEERGAAWL 110
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 192 LQHGLPILEPPRSGCTCARAR 254
LQH LPI+ P RS +C+ +R
Sbjct: 222 LQHFLPIMNPVRSESSCSSSR 242
>09_01_0137 +
2063881-2063934,2066218-2066448,2066656-2067249,
2067980-2068639,2068910-2069164
Length = 597
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 503 PHTFEIEVLRSSV*LQPLPHPS 438
PH +++V+ S++ LQP+P PS
Sbjct: 207 PHPKQMDVIVSNIDLQPMPWPS 228
>05_04_0129 - 18283862-18284328,18284382-18284580
Length = 221
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 78 VAGGETSAVAAHP-VRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPP 224
V+GGE + H +RE + D AG+ RPR H P PP
Sbjct: 111 VSGGERQLLLQHQHLREQQRAGGDQLGAGQEQGGHERPRSSHPPPASSPP 160
>01_07_0337 +
42838260-42838344,42838972-42839084,42839652-42839729,
42839831-42840054,42840084-42840128,42840156-42840264
Length = 217
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 149 TVEAICPVLADWVGRDRGS 93
T A+CP+ AD +GRD G+
Sbjct: 63 TRNAVCPLCADNIGRDMGA 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,109
Number of Sequences: 37544
Number of extensions: 301702
Number of successful extensions: 1058
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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