Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2391
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    30   0.89 
AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear recep...    30   0.89 
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    30   0.89 
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    30   0.89 
AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical ...    29   1.6  
AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear recep...    29   2.1  
AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormo...    29   2.1  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   4.8  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   4.8  
AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear recep...    27   6.3  
AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormo...    27   6.3  
AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical...    27   8.3  

>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 DVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D   + C + C++P HGYH  A+ CR    +F
Sbjct: 28  DQVLEKCQI-CYQPGHGYHFGAFICRACAAFF 58


>AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 DVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D   + C + C++P HGYH  A+ CR    +F
Sbjct: 28  DQVLEKCQI-CYQPGHGYHFGAFICRACAAFF 58


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 DVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D   + C + C++P HGYH  A+ CR    +F
Sbjct: 28  DQVLEKCQI-CYQPGHGYHFGAFICRACAAFF 58


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 DVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D   + C + C++P HGYH  A+ CR    +F
Sbjct: 28  DQVLEKCQI-CYQPGHGYHFGAFICRACAAFF 58


>AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical
           protein M02H5.4 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 359 CSV*CHRPHGYHHPAYFCREAVVYF 433
           C V    PHG H  AY CR   V+F
Sbjct: 22  CPVCYKPPHGIHFGAYTCRACAVFF 46


>AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 347 APDGCSV*CHRPHGYHHPAYFCREAVVYFGLKGGA 451
           +PD C V   + HG H  A  CR    +F   G A
Sbjct: 24  SPDTCQVCGQKSHGKHFGAVTCRACAAFFRRCGSA 58


>AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 55 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 347 APDGCSV*CHRPHGYHHPAYFCREAVVYFGLKGGA 451
           +PD C V   + HG H  A  CR    +F   G A
Sbjct: 24  SPDTCQVCGQKSHGKHFGAVTCRACAAFFRRCGSA 58


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 219 PPRSGCTCARARRLVGDCEVSLN 287
           PP  GC C R +R V D E  +N
Sbjct: 59  PPMCGCGCGRKKRSVDDVEGVIN 81


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 326 VLVGKDVAPDGCSV*CHRP-HGYHHPAYFCREAVVYFGLKGGATVVTILKTLELLSQRCV 502
           V +G  +  + C V C +P HG+H  A+ CR    +F  +   ++VT  K   L + RCV
Sbjct: 20  VELGISLIHEKCRV-CDQPGHGFHFGAFTCRACSAFF-RRAHFSLVTERK-CRLSNGRCV 76


>AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-123 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 DVLVGKDVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D+ V   ++P  C + C  P HG H  A  CR    +F
Sbjct: 13  DLTVIPKISPKKCQI-CENPAHGKHFGAITCRACAAFF 49


>AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 123 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 DVLVGKDVAPDGCSV*CHRP-HGYHHPAYFCREAVVYF 433
           D+ V   ++P  C + C  P HG H  A  CR    +F
Sbjct: 13  DLTVIPKISPKKCQI-CENPAHGKHFGAITCRACAAFF 49


>AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical
           protein K04F10.1 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 455 VVTILKTLELLSQRCVVPFTLVDVY 529
           +VT  + LEL SQR  +   LVDVY
Sbjct: 137 IVTAERDLELFSQRAALKEQLVDVY 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,632
Number of Sequences: 27780
Number of extensions: 214119
Number of successful extensions: 656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)