Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2390
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 34 0.014
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 1.2
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 1.6
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.8
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 4.8
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 25 6.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 6.4
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.5
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 34.3 bits (75), Expect = 0.014
Identities = 24/94 (25%), Positives = 44/94 (46%)
Frame = -2
Query: 574 PQTQPRRYWLLRSTCLGSFGTPRRSCSFSQEAKVASAPRPSSCWCPGSVAAPAMGCLGKP 395
P +Q R RS S+ + + Q+ ++ PR S + P + +PA+ P
Sbjct: 130 PPSQQVRPSTSRSPSYASYNSEEVNFQSYQDPRLL--PRTSQMYMPDNNYSPAVK---SP 184
Query: 394 LGQKDRRVRVPSCIARGSSASWGSHFMPSALPPP 293
Q+ + +RGS A++ + + P+A+PPP
Sbjct: 185 AAQRRSSSYMVPANSRGSPANYNTPYYPTAIPPP 218
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 334 KLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPL---TPGTNKKMAEALKPPSPPGRRSS 501
+LR P PS+ S P ++ IPS+ PP+ P + A PPS P S+
Sbjct: 136 ELRPPTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 370 SLSDLSDPEASLDIPSQVPPLTP 438
S DLSDP S+D S PPL P
Sbjct: 1795 SQDDLSDPARSVDSDSVSPPLPP 1817
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.2
Identities = 27/92 (29%), Positives = 35/92 (38%)
Frame = +1
Query: 226 RPPWRLLQGNMSRSVLD*TCVTRVVATPMA*SVSPRKLRSPVQCKKVPSLSDLSDPEASL 405
RPP RL + S L + +TP S+ P S +PS+ SD L
Sbjct: 104 RPPTRLTSTPSNSSSLP--SIPSSSSTPSISSI-PHTTSSV--SNDIPSVLGSSDHPIDL 158
Query: 406 DIPSQVPPLTPGTNKKMAEALKPPSPPGRRSS 501
D P + P + K L P PP SS
Sbjct: 159 DNPEHLTPPSSFITAKQLSRLPTPLPPPSSSS 190
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 349 VQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAE 462
+ PSLSD P +S SQ P +PG+N +E
Sbjct: 131 ISSPSAPSLSDNLFPGSSFSASSQQNPSSPGSNDIKSE 168
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +1
Query: 325 SPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPSPPGRRSSC 504
+P + P PS+S P ++ P V P P +++ P PPG ++
Sbjct: 554 APTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGAMANV 613
Query: 505 AS 510
++
Sbjct: 614 SA 615
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 264 TRHVSLEEAPRRSEPRKRL 208
T H+ L+E+P SEP K L
Sbjct: 241 TYHLYLDESPEESEPEKEL 259
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 536 HLSWIFRHAEAQLLLLP 486
HL W F H E +L++P
Sbjct: 240 HLFWFFGHPEVYILIMP 256
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 340 RSPVQCKKVPSLSDLSDPEASLDI-PSQVPPLTPGTNKKMAEALKPPSPPGRR 495
+SP PS S L D + P+ + TP + + + AL P PPG++
Sbjct: 516 QSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDEKSHALGFPPPPGQK 568
>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 325 SPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPG 441
SPR L P C + L D S +IP + PL PG
Sbjct: 147 SPRPL--PWSCYGLYGLRDALTIAFSFNIPPMIAPLLPG 183
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 394 LGQKDRRVRVPSCIARGSSASWGSHFMPSALPPPSSHKSSLRLNETC 254
L D + + PS I+ SS+S PS+ PPPSS N+ C
Sbjct: 122 LSTTDEQPKEPSIISISSSSS-----DPSSSPPPSSSLLKTPDNDFC 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,655
Number of Sequences: 5004
Number of extensions: 48264
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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