Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2390
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical... 31 0.48
AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical... 31 0.48
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 31 0.83
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 1.1
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 30 1.1
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 1.1
U97407-1|AAB52478.2| 411|Caenorhabditis elegans Hypothetical pr... 29 1.9
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 29 2.5
Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 29 3.3
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 29 3.3
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 28 4.4
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical
protein Y47G6A.5b protein.
Length = 574
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 400 SLDIPSQVPPLTPGTNKKMAEALKPPSPPGRRSS 501
S+ +P++ PPL P T + +PP PP R S
Sbjct: 7 SVAVPAKPPPLRPSTQSVSSTDPRPPIPPRRSES 40
>AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical
protein Y47G6A.5a protein.
Length = 618
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 400 SLDIPSQVPPLTPGTNKKMAEALKPPSPPGRRSS 501
S+ +P++ PPL P T + +PP PP R S
Sbjct: 51 SVAVPAKPPPLRPSTQSVSSTDPRPPIPPRRSES 84
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 30.7 bits (66), Expect = 0.83
Identities = 31/116 (26%), Positives = 48/116 (41%)
Frame = +1
Query: 139 KSRVPAL*SWSGRRASPTMDSRRQPFTRLRPPWRLLQGNMSRSVLD*TCVTRVVATPMA* 318
KSR P + S+ +PT ++ ++ T PP R+ Q +R +L T R+V T
Sbjct: 273 KSREPFIGSFGATIFNPTAENNKEQETPRAPPRRVHQ-PYTRRIL--TPKPRIVHTT--- 326
Query: 319 SVSPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPSPP 486
+V P PVQ + P P + P P + + PP+PP
Sbjct: 327 TVMPTTHAPPVQVQVEPVTQPTPPPNPFVFAPLPPFPQFGLPQPNLFQFPAPPAPP 382
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 391 PEASLDIPSQVPPLTPGTNKKMAEA--LKPPSPPG 489
P+ P+Q PLTPG + +A PP PPG
Sbjct: 204 PQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 319 SVSPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKK-MAEALKPPSPPGRR 495
+V P +++PV+ K P D D E D P+ TP KK A A KP P ++
Sbjct: 130 AVPPTPVKNPVKKFKAPWEDDEVDVEDVKDAPTVPAKKTPVLKKKEPAAAAKPRDPSPKK 189
Query: 496 SS 501
++
Sbjct: 190 AA 191
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +1
Query: 289 TRVVATPMA*SVSPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEAL 468
T + A P A V P +++PV+ K P D DP + P TP +K A
Sbjct: 412 TPLQADPKAQEVPPTPVKNPVKKYKPPWEVDDEDPVEEVKQPEAPAKKTPVLKRKEPAAK 471
Query: 469 KPPSP 483
P
Sbjct: 472 DTAKP 476
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 391 PEASLDIPSQVPPLTPGTNKKMAEA--LKPPSPPG 489
P+ P+Q PLTPG + +A PP PPG
Sbjct: 204 PQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238
>U97407-1|AAB52478.2| 411|Caenorhabditis elegans Hypothetical
protein C34G6.5 protein.
Length = 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/78 (32%), Positives = 32/78 (41%)
Frame = -2
Query: 595 IENSSKPPQTQPRRYWLLRSTCLGSFGTPRRSCSFSQEAKVASAPRPSSCWCPGSVAAPA 416
+ N PQTQ R L L + + CS S A A P C C G+ ++P
Sbjct: 149 LSNFLYSPQTQRFR---LVDFGLATVDRSKNECSRSH-AVAAMERDPECCSCKGT-SSPC 203
Query: 415 MGCLGKPLGQKDRRVRVP 362
M C GKP + V P
Sbjct: 204 MFCRGKPKRENYNVVGTP 221
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 343 SPVQCKKVPSLSDLSDPEASLDIP---SQVPPLTPGTNKKMAEALKPPSPPGR 492
+P + K VP DL+ PE + P ++VPP+ PP PP R
Sbjct: 139 APARSKTVP---DLATPELPIPQPPRFAEVPPIPDAPTNPPTTTTPPPPPPTR 188
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 216 YEAPTAVAPPPRKHVSFSLRLDLCDEGGGNADGI 317
Y A A++ P + +SFS ++ LCD+G G+
Sbjct: 237 YMAIEAISFPDQPSISFSCQIKLCDKGSDECRGM 270
>Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical
protein F08G12.1 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 438 GHQQEDGRGAEATFASWEKEQLRLGVPKDPRQVERSSQ*RRGCVWGGFEEFSI 596
G + EDG TF ++E GV K P+Q E S+ VW E+FS+
Sbjct: 357 GDEDEDGIN---TFLGEKQETKNHGVTK-PKQSESDSETENNMVWKFEEDFSV 405
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 177 ESESDYGLEEAAFYEAPTAVAPPPRKHVSFSLRLDLCDEGGGNADGIKCEPQEAEEPRAM 356
E S G + + P + PP H + R + GGG + G++ P A PRA
Sbjct: 12 EPGSPCGAPPSLTFTPPATLVPPTHHHSRSTNRGGVSGTGGGGSGGLQGAP-GAGGPRAS 70
Query: 357 QEGTLTLR 380
T R
Sbjct: 71 HSSRRTSR 78
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +3
Query: 177 ESESDYGLEEAAFYEAPTAVAPPPRKHVSFSLRLDLCDEGGGNADGIKCEPQEAEEPRAM 356
E S G + + P + PP H + R + GGG + G++ P A PRA
Sbjct: 12 EPGSPCGAPPSLTFTPPATLVPPTHHHSRSTNRGGVSGTGGGGSGGLQGAP-GAGGPRAS 70
Query: 357 QEGTLTLR 380
T R
Sbjct: 71 HSSRRTSR 78
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 394 EASLDIPSQVPPLTPGTN----KKMAEALKPPSPPGRRSSCA 507
E+S P++ PP +N +K AEAL PP PP A
Sbjct: 166 ESSKSAPTKNPPKARKSNVKKPEKEAEALAPPEPPAEPQEAA 207
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 388 DPEASLDIPSQVP-PLTPGTNKKMAEALKPPS-PPGRRSSCASA 513
DP A P +P P T N L PP PP R+S ASA
Sbjct: 307 DPPAPQPRPRPIPVPPTTSYNSSFCGLLPPPPVPPDLRASAASA 350
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 307 PMA*SVSPRKLRSPVQCKKVPS-LSDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPSP 483
PM SP+ +PV+ ++P +S + P P PP TP + + + S
Sbjct: 329 PMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPSASSSVTFS-PTKSV 387
Query: 484 PGRRSSCASACR 519
G RS +A R
Sbjct: 388 DGGRSDLMAAIR 399
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 187 PTMDSRRQPFTRLRPPWRLLQGNMSRS 267
PT+DS P + PPW ++G S S
Sbjct: 2086 PTIDSNPSPADEILPPWLSIRGYGSNS 2112
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 325 SPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPSPPGRRSS 501
+P S + V + +S EAS D P++ P KK+A ++KP P R+S+
Sbjct: 170 APSTSSSVETVESVTEVVAISSAEASSDAPARSP-----LKKKVANSVKPVVLPSRKST 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,371
Number of Sequences: 27780
Number of extensions: 315543
Number of successful extensions: 1289
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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