Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2390
(599 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 26 0.25
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 25 0.43
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 0.43
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 25 0.57
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 25 0.57
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 25 0.75
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 25 0.75
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 23 1.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 2.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 4.0
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 5.3
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 7.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 9.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 9.2
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 26.2 bits (55), Expect = 0.25
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 376 SDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPSPPGRRSSCAS 510
SD + A L IPS P TPG + K E G ++ +S
Sbjct: 873 SDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFAQGFATAASS 917
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 25.4 bits (53), Expect = 0.43
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRKHVSFSLRLDLCD 290
D ++++ S WT + +E EA A+ PP R +LRL L D
Sbjct: 142 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP-TDKALRLPLQD 195
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.43
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRKHVSFSLRLDLCD 290
D ++++ S WT + +E EA A+ PP R +LRL L D
Sbjct: 199 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP-TDKALRLPLQD 252
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 25.0 bits (52), Expect = 0.57
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 367 PSLSDLSDPEASLDIPSQV 423
P+LS LSDPE +D +Q+
Sbjct: 269 PNLSKLSDPEVWIDAVTQI 287
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 25.0 bits (52), Expect = 0.57
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 367 PSLSDLSDPEASLDIPSQV 423
P+LS LSDPE +D +Q+
Sbjct: 322 PNLSKLSDPEVWIDAVTQI 340
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 24.6 bits (51), Expect = 0.75
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 439 GTNKKMAEAL--KPPSPPGRRSSCASACRKIQDKW 537
G ++++ + L +PP PP + A R I KW
Sbjct: 894 GRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKW 928
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 24.6 bits (51), Expect = 0.75
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 439 GTNKKMAEAL--KPPSPPGRRSSCASACRKIQDKW 537
G ++++ + L +PP PP + A R I KW
Sbjct: 890 GRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKW 924
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 23.4 bits (48), Expect = 1.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +3
Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPR 251
D ++++ S WT + +E EA A+ PP R
Sbjct: 126 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 167
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.0 bits (47), Expect = 2.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 319 SVSPRKLRSPVQCKKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEALKPPS--PPGR 492
+VS + P ++V L+ L + ++ SQ+PP +++AEA++ S P G
Sbjct: 706 AVSVPQSHQPGAMEQVSYLTSLERTQPTM---SQMPPTAQPRMERLAEAVRTASQIPQGF 762
Query: 493 RSSCASACRK 522
+ C +
Sbjct: 763 KDLVQKKCEE 772
Score = 21.8 bits (44), Expect = 5.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 106 PYISLIWIK*LKSRVPAL*SWSGRRASPTMDSRRQPFTRLRPPWRL 243
PY L+W + S A+ W+ R+ P ++ + + L P W L
Sbjct: 467 PYDHLVWNSWMPSIRGAIQQWTCRQPEPLIE-LIEHWMPLLPNWIL 511
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.0
Identities = 8/23 (34%), Positives = 9/23 (39%)
Frame = -2
Query: 463 PRPSSCWCPGSVAAPAMGCLGKP 395
PRP W P C+G P
Sbjct: 132 PRPMGPWISVQEQVPRFRCIGPP 154
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 424 PPLTPGTNKKMAEALKPPSPP 486
PPLT + + ++ PP PP
Sbjct: 164 PPLTYHQFQTVVASMDPPEPP 184
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.4 bits (43), Expect = 7.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +1
Query: 37 RPITVLCSPVQCDLAAIIVSPSAPYISLIW 126
R + ++ + C+ +IVSP+ IW
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -3
Query: 309 RRCHHPRHTSLV*D*TRHVSLEEAPRRSEPRKRLPP 202
+ C++P H S D H++ + R+ ++ L P
Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSP 421
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -3
Query: 309 RRCHHPRHTSLV*D*TRHVSLEEAPRRSEPRKRLPP 202
+ C++P H S D H++ + R+ ++ L P
Sbjct: 386 KTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSP 421
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic
acetylcholine receptor alpha1subunit protein.
Length = 601
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 10 TAVSCYIAPRP 42
TA+SC +AP P
Sbjct: 3 TAISCLVAPFP 13
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,901
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -