Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2388
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 31 0.097
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.6
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 2.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 4.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.8
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 6.4
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 6.4
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 8.5
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 25 8.5
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 8.5
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 208 CRSRST*RCPYLNPTR-STSQWSNLSMYLFIRLSTKLLKN 324
C ST CPYL PT NL ++L++RLS + N
Sbjct: 404 CNPASTILCPYLFPTNVRMESLINLELFLYLRLSQNDIDN 443
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 192 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 278
P PVAV Q + I Q P+HV+ +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 159 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 254
V +++ +G P H ++V P YV +P P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 5 PPPPVERTSVRQHDRF*NNSRPSLSSAR 88
PPPP E +S+R+ + RPS+ AR
Sbjct: 544 PPPPTETSSLRRKNTL--TRRPSIRHAR 569
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 186 PIPHPVAVSVPQYVKVPIPQPYPVHV 263
P P P AV VP PIP P P +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 341 DRVRYWFFNNLVDNLINRYMDRLLHCDVDRVGLRY 237
D+V YW + V L++R ++R+ C + + +Y
Sbjct: 24 DKVFYWSQIHKVRKLVDRSIERMESCSIINIITKY 58
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 528 LQTFKNLFGVNRIRSFSVYLPYGG 457
+QTF+ L + R+ SFS L GG
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGG 148
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 293 NRYMDRLLHCDVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLH 168
N+Y ++L + LR G +H L H ++ L+H
Sbjct: 201 NKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGRTLVH 242
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 443 HGYMDGIGLRDGHLYFFFDLNGI 375
H +DG L DG + +FF + GI
Sbjct: 14 HFGIDGCSLADGDIDYFFTVTGI 36
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 261 RGPGRVEVWAPSRTAG 214
+G GRVE+W +RT G
Sbjct: 191 KGNGRVEIWFGARTPG 206
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +3
Query: 9 RRRSNEPQ*GNMIAFKTTXXXXXXXXXXXRPSEEWEPEGHTHTEHTKPYHVT 164
R + E Q G +AF +T R EEW PE E + YH T
Sbjct: 277 RMDAAEGQMGKALAFASTHPSSKKRI---RKIEEWLPEAQVKRETSDCYHET 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,460
Number of Sequences: 5004
Number of extensions: 50653
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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