Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2388
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 30 1.6
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.2
11_06_0679 - 26227654-26227770,26234067-26236217 29 2.8
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 2.8
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 29 2.8
07_03_0698 - 20765305-20768526 28 5.0
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 28 5.0
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 28 6.6
07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263... 28 6.6
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 28 6.6
01_06_1623 - 38716606-38717424 28 6.6
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 27 8.7
05_03_0039 - 7621613-7622695 27 8.7
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 27 8.7
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 96 RPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 248
RPS GH H P + + + P P PV +SVP+ + P P P
Sbjct: 947 RPSRSEFKGGHDHRSPCVPSNRRDIPLVRRP-PSPVVLSVPRVPRPPPPSP 996
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 171 KKIGVPIPHPVAVSVPQYVKVPI--PQPYPVHVTVEQPI 281
K P P P AV +P+ V +P P P PV T P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPV 784
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/60 (26%), Positives = 20/60 (33%)
Frame = -3
Query: 258 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQKAERWRAL 79
G GR W R G PD ++ P H T C C + P E R +
Sbjct: 589 GRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQM 648
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 327 LVFQQLGGQPYKQVHG*VAPL*RGPGRVEVWAPSRTAGPTQ--PPDGE 190
L F QLG Q + VHG P+ G G W P+R +GPT+ P GE
Sbjct: 408 LSFHQLGTQSREMVHG-KPPV--GGG----WTPNRNSGPTRKAPSRGE 448
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 177 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 260
IG P+P+P +V VP V VPIP P+H
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMH 117
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 419 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 294
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +1
Query: 241 LNPTRSTSQWSNLSMYLFIRLSTKL-------LKNQYRTRSKNQCPMKSKSLIPLRSKKK 399
L+ RS S WS ++ +S KL L+ + R S+ M+ + R +K+
Sbjct: 469 LDQVRSGSFWSKYKHTKYVPVSEKLKDFIYAQLEEKVRRLSEYDKRMERERE---RERKR 525
Query: 400 *RCPSLSPIPSMYPCTNTSTT 462
R PS SP PS P + S T
Sbjct: 526 VRAPSPSPSPSPSPSPSASAT 546
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 56 NNSRPSLSSARQRSAF*RMGARRPHAHRTHEAVPCD-RGEEDRSSDSPSGGCVGPAVREG 232
+N RP+++ Q S + AR H A P + GEE +PS V A+R
Sbjct: 22 HNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTPSAAAVAEAIRRA 81
Query: 233 AHTS 244
+ S
Sbjct: 82 SSAS 85
>07_01_0359 -
2633735-2634115,2634345-2634600,2634708-2635552,
2635681-2635956,2636778-2636941,2637924-2638197
Length = 731
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 175 FFTTVTWYGFVCSVCVWPSGSHSSEGRALASAT 77
F +V W FV +W S H S RA A +T
Sbjct: 155 FLLSVYWVSFVTYFVLWKSYKHVSNMRAAARST 187
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 138 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 248
E T P+ V V + P+PVAV+V + P+PQP
Sbjct: 72 ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109
>01_06_1623 - 38716606-38717424
Length = 272
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 147 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 242
+PY V V++ IG PIP A +VP + +P+P
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVP 38
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 117 PEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 248
P+GHT E T + T + VPI P V V Q +P+ QP
Sbjct: 269 PKGHT-AEGTMNF--TSIAPSQVPITQPFQVPVTQPSHIPLTQP 309
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 RPSEEWEPEGHTHTE-HTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 254
+P+ E +PE + KPY K P P P P+ P P+PYP
Sbjct: 103 KPNPEPKPEPKPEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEPEPKPYP 156
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 461 VVDVFVHGYMDGIGLRDGHLYFFFDLNGIRLFD---FIGHWFFDRVR 330
V+ + V + D +GL G L F DLN + +D F+ W +R++
Sbjct: 394 VIPITVESFRDILGLPFGGLSFGKDLNLLSSYDWCKFVYDWCMNRIK 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,736
Number of Sequences: 37544
Number of extensions: 407406
Number of successful extensions: 1649
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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