Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2387
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.8  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.8  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.3  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 443 DLMKYTPLLYTNNRIYNTEV*FLLHYVIPSSWEVLRILLQKIVACL 580
           +++KY PL      +Y+  + F+  Y+   S E+LR     I+  L
Sbjct: 127 EILKYNPLTDETREVYDYILSFIQQYLGDQSPEILRSAADLIIELL 172


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 271 NGYVVTGSHDERVFVSCRFLEMDGSTLLSLALTEAVL-Y*IY-HRILIGTH*EYPAR-NA 441
           +G ++    +ER  +S R  E+D    LSL +++A+L Y I+ H+         PA    
Sbjct: 113 DGQLLILKDNERTTISNRCAELDSQVPLSLGVSKALLDYVIFCHQEESFWPLSEPANLKK 172

Query: 442 RLDEVYTSVVY 474
           R DE++ S+ Y
Sbjct: 173 RFDEIFESLRY 183


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 234 KHVISDPPDPLTVLLGTSSTGH 169
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 223 FGSSRSTNGAFRYLKHGSSFLSNPSLATKGSLSKLTHKLNCFIMSEYKVLNYVQN 59
           FGSS S N       +G SFL   S      +S L+H  N F  S  + +  VQ+
Sbjct: 180 FGSSNSVNPNSSARNNGGSFLDQLS---SNPVSALSHGWNMFSRSVSQQIQDVQD 231


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 442  SRFSLDTLSGSRLRSGGIFSKALLLLGLVIA 350
            S   L  L  +  +SGG++S ALL+LG  I+
Sbjct: 998  SSLILKLLLNNLKQSGGVYSLALLILGFDIS 1028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,873
Number of Sequences: 5004
Number of extensions: 50034
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)