Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2387
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0654 + 23173253-23173812,23174365-23175262                       32   0.30 
04_01_0630 - 8354628-8355803,8355837-8355926                           31   0.70 
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    29   2.1  
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143...    29   2.8  
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970     28   4.9  

>06_03_0654 + 23173253-23173812,23174365-23175262
          Length = 485

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 141 VASDGFDKNDDPCLRYLKAPLVDREDPK*RA*GDVDCLRFGPQERVCSNRQPRREGFRVV 320
           +A+DG   NDDPCL      +    D   RA  +   LR G   RV  +R  RR+G  ++
Sbjct: 54  MAADGLGTNDDPCL-----GMEFESDGAARAFYNAYALRLGFGIRVARSRSERRKGVELL 108

Query: 321 PLSR 332
            + R
Sbjct: 109 IMKR 112


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 111 LWVNLLSEPFVASDGFDKNDD-PCLRYLKAP 200
           +W N LSE F++  G+ KNDD PC+   K+P
Sbjct: 42  MWYNRLSE-FLSLKGYTKNDDCPCVFIKKSP 71


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 VPKSTVSGSGGSEMTCLGRRRLFTIRSAR 271
           VP+    G GG+ M  +GR R + +RS R
Sbjct: 121 VPQEAAVGGGGAMMAVVGRSRQYVLRSIR 149


>03_01_0178 +
           1437263-1438017,1438754-1438858,1438950-1439072,
           1439908-1440078,1440163-1440292,1440372-1440581,
           1440675-1440773
          Length = 530

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 188 PKSTVSGSGGSEMTCLGRRRLFTIR 262
           P+ST SGS G E++ LG    FT+R
Sbjct: 185 PRSTASGSAGPEVSHLGWGHWFTLR 209


>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
          Length = 371

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +3

Query: 150 DGFDKNDDP--CLRYLKAPLVDREDPK*RA*GDVDCLRFGPQERVCSNRQPRREGF 311
           D ++ N  P  C++  K P  +R DP  R+     C  + P  R   N  P    F
Sbjct: 87  DKYEHNRVPLTCIQGCKPPQAERPDPIGRSASPSPCSSYQPSPRASYNPSPASSSF 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,938,992
Number of Sequences: 37544
Number of extensions: 319330
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)