Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2387
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl pept... 31 0.62
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 3.3
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 3.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 3.3
AC024785-9|ABQ40025.1| 359|Caenorhabditis elegans C-type lectin... 29 3.3
AC024785-8|ABQ40024.1| 359|Caenorhabditis elegans C-type lectin... 29 3.3
AC024785-7|ABQ40023.1| 359|Caenorhabditis elegans C-type lectin... 29 3.3
Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 27 7.7
>U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 4 protein.
Length = 629
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 309 FRVVPLSRNGWEYFAITS-PNRSSALLNIPPDLNRDPLRVSSEKRET 446
F + L +NG + FAI S P R+S++++I PL+V E R++
Sbjct: 313 FGYLSLDQNGSDLFAIASGPKRASSVISIDLANKNFPLKVHRESRDS 359
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 291 AGYYIPVLADRIVNSRRRPKHVISDPPDPLTVLLGTSSTG 172
+G+++ VL VN + VI +P LLGT STG
Sbjct: 10512 SGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGTDSTG 10551
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 291 AGYYIPVLADRIVNSRRRPKHVISDPPDPLTVLLGTSSTG 172
+G+++ VL VN + VI +P LLGT STG
Sbjct: 10557 SGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGTDSTG 10596
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 291 AGYYIPVLADRIVNSRRRPKHVISDPPDPLTVLLGTSSTG 172
+G+++ VL VN + VI +P LLGT STG
Sbjct: 10557 SGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGTDSTG 10596
>AC024785-9|ABQ40025.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform c protein.
Length = 359
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -3
Query: 422 SQWVPIKIRWYIQ*STASVRASDSKVLPSISRKRHD----TKTLSSWLPVTTYPFLRTES 255
++W+P++ ++ I A V + S+VLP +S R D TL S +P++ +
Sbjct: 267 ARWMPLEEKYPIYAVNARVSGNGSQVLPPMSVPRMDDFLMVITLQSHVPLSNFQSANLRW 326
Query: 254 *TVDVALSTSFRILP 210
+ S+SF + P
Sbjct: 327 YNSQSSDSSSFPVYP 341
>AC024785-8|ABQ40024.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform b protein.
Length = 359
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -3
Query: 422 SQWVPIKIRWYIQ*STASVRASDSKVLPSISRKRHD----TKTLSSWLPVTTYPFLRTES 255
++W+P++ ++ I A V + S+VLP +S R D TL S +P++ +
Sbjct: 267 ARWMPLEEKYPIYAVNARVSGNGSQVLPPMSVPRMDDFLMVITLQSHVPLSNFQSANLRW 326
Query: 254 *TVDVALSTSFRILP 210
+ S+SF + P
Sbjct: 327 YNSQSSDSSSFPVYP 341
>AC024785-7|ABQ40023.1| 359|Caenorhabditis elegans C-type lectin
protein 75, isoform a protein.
Length = 359
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -3
Query: 422 SQWVPIKIRWYIQ*STASVRASDSKVLPSISRKRHD----TKTLSSWLPVTTYPFLRTES 255
++W+P++ ++ I A V + S+VLP +S R D TL S +P++ +
Sbjct: 267 ARWMPLEEKYPIYAVNARVSGNGSQVLPPMSVPRMDDFLMVITLQSHVPLSNFQSANLRW 326
Query: 254 *TVDVALSTSFRILP 210
+ S+SF + P
Sbjct: 327 YNSQSSDSSSFPVYP 341
>Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical
protein F40D4.8 protein.
Length = 352
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = -1
Query: 130 LSKLT--HKLNCFIMSEYKVLNY---VQNIVIYIVNL*HYLFI 17
+SK T HK++ F++ Y LNY V +I+ I+N+ H+L +
Sbjct: 1 MSKTTFLHKIDDFLVQIYSYLNYVIFVVSIIGIILNVFHFLVL 43
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 78 TLYSLIIKQFSLWVNLLSEPFVASDGFDKND 170
TL+SLI F ++ L +P + DG D+++
Sbjct: 191 TLFSLIALSFLIYKKLFQKPHTSEDGEDEDE 221
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 279 IPVLADRIVNSRRRPKHVISDPPDP 205
IPV+ +RRR +HV+S PP P
Sbjct: 3 IPVV--EFTTARRRKRHVVSTPPPP 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,003
Number of Sequences: 27780
Number of extensions: 277619
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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