Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2386
(476 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:... 144 9e-34
UniRef50_O96545 Cluster: Putative gag-related protein; n=1; Lyma... 92 7e-18
UniRef50_UPI0000D578A9 Cluster: PREDICTED: similar to RNA-direct... 55 7e-07
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 54 1e-06
UniRef50_UPI0000D57792 Cluster: PREDICTED: similar to Nucleic-ac... 45 0.001
UniRef50_UPI0000D578AA Cluster: PREDICTED: similar to Nucleic-ac... 44 0.002
UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-direct... 39 0.050
UniRef50_Q6KF09 Cluster: Gag protein; n=29; cellular organisms|R... 39 0.066
UniRef50_Q6GKZ8 Cluster: RE14563p; n=5; melanogaster subgroup|Re... 39 0.066
UniRef50_Q867Z5 Cluster: Gag protein; n=1; Drosophila virilis|Re... 38 0.11
UniRef50_A4RA56 Cluster: Putative uncharacterized protein; n=1; ... 38 0.15
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 37 0.20
UniRef50_Q6J4U8 Cluster: Gag protein; n=8; Drosophila melanogast... 37 0.20
UniRef50_A3NKT8 Cluster: Putative uncharacterized protein; n=2; ... 36 0.46
UniRef50_Q9NBX5 Cluster: Nucleic-acid-binding protein from trans... 36 0.46
UniRef50_Q5KF08 Cluster: Expressed protein; n=2; Filobasidiella ... 36 0.61
UniRef50_Q0MYW9 Cluster: Ankyrin-1-like protein; n=1; Emiliania ... 35 0.81
UniRef50_UPI0000D5776C Cluster: PREDICTED: similar to Nucleic-ac... 35 1.1
UniRef50_UPI0000558409 Cluster: hypothetical protein BmalF_02004... 35 1.1
UniRef50_O44939 Cluster: Gag protein; n=1; Drosophila yakuba|Rep... 35 1.1
UniRef50_P28167 Cluster: Zinc finger protein 2; n=7; Sophophora|... 35 1.1
UniRef50_UPI0000D9BC43 Cluster: PREDICTED: hypothetical protein;... 34 1.4
UniRef50_A4RKQ4 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_Q04VL4 Cluster: Glycosyltransferase; n=5; Bacteria|Rep:... 33 2.5
UniRef50_A6SZX1 Cluster: Uncharacterized conserved protein; n=2;... 33 2.5
UniRef50_UPI00015B43B0 Cluster: PREDICTED: similar to reverse tr... 33 3.3
UniRef50_UPI00006CB82B Cluster: hypothetical protein TTHERM_0057... 33 3.3
UniRef50_Q8LA17 Cluster: PhD-finger protein, putative; n=2; Arab... 33 3.3
UniRef50_Q10CD7 Cluster: Cullin-4B, putative, expressed; n=8; Vi... 33 3.3
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 3.3
UniRef50_O17451 Cluster: Gag-like protein; n=1; Culex pipiens|Re... 33 4.3
UniRef50_Q7SHM1 Cluster: Predicted protein; n=1; Neurospora cras... 33 4.3
UniRef50_Q1DZD8 Cluster: Putative uncharacterized protein; n=1; ... 33 4.3
UniRef50_Q3MIN7 Cluster: Ral guanine nucleotide dissociation sti... 33 4.3
UniRef50_UPI0000F2DEAA Cluster: PREDICTED: hypothetical protein;... 32 5.7
UniRef50_UPI0000F34894 Cluster: KIF26A protein.; n=2; Laurasiath... 32 5.7
UniRef50_Q0E2G2 Cluster: Os02g0243900 protein; n=1; Oryza sativa... 32 5.7
UniRef50_Q179G6 Cluster: Putative uncharacterized protein; n=3; ... 32 5.7
UniRef50_A6RCU0 Cluster: Predicted protein; n=8; Ajellomyces cap... 32 5.7
UniRef50_Q5UYQ6 Cluster: Putative uncharacterized protein; n=1; ... 32 5.7
UniRef50_Q4RN83 Cluster: Chromosome undetermined SCAF15016, whol... 32 7.5
UniRef50_Q7NFC0 Cluster: Gll3606 protein; n=1; Gloeobacter viola... 32 7.5
UniRef50_Q4E908 Cluster: Gag protein; n=1; Wolbachia endosymbion... 32 7.5
UniRef50_Q5JMM1 Cluster: Auxin response factor 3; n=9; BEP clade... 32 7.5
UniRef50_Q2JBQ0 Cluster: Putative uncharacterized protein; n=3; ... 31 10.0
UniRef50_Q6UJ38 Cluster: Gag protein; n=4; Drosophila virilis|Re... 31 10.0
UniRef50_Q17KW8 Cluster: Zinc finger protein; n=1; Aedes aegypti... 31 10.0
UniRef50_A0BI32 Cluster: Chromosome undetermined scaffold_109, w... 31 10.0
UniRef50_A1D0G3 Cluster: MFS transporter, putative; n=4; Trichoc... 31 10.0
>UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:
Gag-like protein - Bombyx mori (Silk moth)
Length = 553
Score = 144 bits (349), Expect = 9e-34
Identities = 63/69 (91%), Positives = 64/69 (92%)
Frame = -3
Query: 474 PVNSVHCMHTGRGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCH 295
PVNSVH MHTGRGREPY MVL+ALQPTPEGK IFNIRTVC LSGIAVE PHKKGTPSQCH
Sbjct: 289 PVNSVHRMHTGRGREPYNMVLIALQPTPEGKHIFNIRTVCKLSGIAVEVPHKKGTPSQCH 348
Query: 294 NCQLYGHSS 268
NCQLYGHSS
Sbjct: 349 NCQLYGHSS 357
Score = 103 bits (246), Expect = 3e-21
Identities = 52/71 (73%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
Frame = -2
Query: 208 SALAIKKPRRNRLAASCV--RTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAP 35
+AL + + SCV RTQGHPANYRGCPRAPKINRRVARQNRLRAS DIKASAP
Sbjct: 375 TALCARDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASRLDIKASAP 434
Query: 34 SVSQAKPAFVP 2
SV +AKPAFVP
Sbjct: 435 SVPKAKPAFVP 445
Score = 92.3 bits (219), Expect = 5e-18
Identities = 39/53 (73%), Positives = 41/53 (77%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCPYTGSPRKLPRMPPSPE 105
NCHARPRCVKCLGDHATALC RDQKTATEPPSCVLC G P P +P+
Sbjct: 359 NCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGHPANYRGCPRAPK 411
>UniRef50_O96545 Cluster: Putative gag-related protein; n=1;
Lymantria dispar|Rep: Putative gag-related protein -
Lymantria dispar (Gypsy moth)
Length = 537
Score = 91.9 bits (218), Expect = 7e-18
Identities = 41/69 (59%), Positives = 47/69 (68%)
Frame = -3
Query: 474 PVNSVHCMHTGRGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCH 295
PV VH M GRGR P M+LV L EGK IF I+T+C LSG++VE PHK G +QCH
Sbjct: 260 PVVEVHRMIRGRGRYPLNMILVCLTNNAEGKGIFKIKTICGLSGVSVEPPHKNGNLAQCH 319
Query: 294 NCQLYGHSS 268
CQLYG SS
Sbjct: 320 KCQLYGQSS 328
Score = 66.9 bits (156), Expect = 2e-10
Identities = 35/80 (43%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 341 SPSKPHIRKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALCTR--DQKTATEPPS 168
S PH + +LA G NC ARPRCVKCLGDH T+ C R D EPP+
Sbjct: 305 SVEPPH-KNGNLAQCHKCQLYGQSSKNCFARPRCVKCLGDHHTSQCERPKDISLCKEPPA 363
Query: 167 CVLCPYTGSPRKLPRMPPSP 108
CVLC G P P +P
Sbjct: 364 CVLCGEYGHPANYRGCPRAP 383
Score = 39.1 bits (87), Expect = 0.050
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQ 80
GHPANYRGCPRAP RR+ RQ
Sbjct: 371 GHPANYRGCPRAP---RRLVRQ 389
>UniRef50_UPI0000D578A9 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 894
Score = 55.2 bits (127), Expect = 7e-07
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = -3
Query: 465 SVHCMHTGRGREPYKMVLVALQ-PTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNC 289
S H MHTG+ + P LV L+ P + K+++ ++TVCSL + VE P K G +QCH C
Sbjct: 113 STHRMHTGKRQLP----LVLLEAPLDQAKEVWKMKTVCSLM-VKVEKPKKSGKAAQCHRC 167
Query: 288 QLYGHS 271
Q + H+
Sbjct: 168 QRFFHA 173
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC--PYTGSPRKLP--RMPPSPEN 102
NC A RCVKC H T +C +++K EPP C C P+T + R P ++P + E+
Sbjct: 176 NCTAEHRCVKCGKAHDTKVCAKERK---EPPKCANCNGPHTANYRDCPQFQLPAAAED 230
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 54.4 bits (125), Expect = 1e-06
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = -3
Query: 462 VHCMHTGRGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQL 283
VH MH G+ + P +VLV P + K ++ I+TVCSL + VE P K G +QCH CQ
Sbjct: 289 VHRMHAGKRQLP--LVLVEA-PLSQTKDVWQIKTVCSLM-VKVEKPRKSGKAAQCHRCQR 344
Query: 282 YGHS 271
+ H+
Sbjct: 345 FFHA 348
Score = 40.3 bits (90), Expect = 0.022
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCPYTGSPR 135
NC A RCVKC H T +CT++ K EPP C P R
Sbjct: 351 NCTAEHRCVKCGEAHDTKVCTKESK---EPPKCANFPQAAENR 390
>UniRef50_UPI0000D57792 Cluster: PREDICTED: similar to
Nucleic-acid-binding protein from mobile element jockey
(ORF1); n=1; Tribolium castaneum|Rep: PREDICTED: similar
to Nucleic-acid-binding protein from mobile element
jockey (ORF1) - Tribolium castaneum
Length = 295
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -3
Query: 441 RGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHS 271
+G P +MVLV ++ E K I+NI + LS + E KG QCH+CQ++GH+
Sbjct: 199 KGNVPTQMVLVEIKR--EYKSIYNITNLFGLS-VTAEPLKNKGFTIQCHSCQIFGHA 252
Score = 37.5 bits (83), Expect = 0.15
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
NC+A+ +C+KC H+T LC K T PP C C
Sbjct: 255 NCNAQFKCMKCGESHSTHLCA---KPKTTPPKCANC 287
>UniRef50_UPI0000D578AA Cluster: PREDICTED: similar to
Nucleic-acid-binding protein from mobile element jockey
(ORF1); n=1; Tribolium castaneum|Rep: PREDICTED: similar
to Nucleic-acid-binding protein from mobile element
jockey (ORF1) - Tribolium castaneum
Length = 347
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = -3
Query: 447 TGRGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHS 271
T R E MVL L+ + I+++ C L+ I VE KK QCH CQ+YGHS
Sbjct: 150 TNRHNEEIAMVLTELER--KFTSIYSLEVCCHLT-IKVEVLRKKSYNGQCHRCQMYGHS 205
Score = 34.3 bits (75), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 260 CHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
C A +C+KC DH+T CT KT P +C C
Sbjct: 209 CKADFKCLKCAEDHSTHACT---KTKATPATCANC 240
>UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to RNA-directed DNA polymerase from
mobile element jockey (Reverse transcriptase), partial -
Tribolium castaneum
Length = 830
Score = 39.1 bits (87), Expect = 0.050
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 160 CVRTQG-HPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQAKPAFVP 2
C G H ANYRGCP+ PK+ + A + A KA+AP + A P
Sbjct: 33 CANCNGPHTANYRGCPQFPKLKKTAALKTTAPAKVVAPKAAAPQKAAAPKTAAP 86
>UniRef50_Q6KF09 Cluster: Gag protein; n=29; cellular organisms|Rep:
Gag protein - Drosophila melanogaster (Fruit fly)
Length = 965
Score = 38.7 bits (86), Expect = 0.066
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 266 SNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
++C PRC+KC G H ++ CT K T P +CV C
Sbjct: 674 NSCMRPPRCMKCAGGHLSSCCT---KPRTTPATCVNC 707
>UniRef50_Q6GKZ8 Cluster: RE14563p; n=5; melanogaster subgroup|Rep:
RE14563p - Drosophila melanogaster (Fruit fly)
Length = 409
Score = 38.7 bits (86), Expect = 0.066
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 342 IAVETPHKKGTPSQCHNCQLYGHS 271
I VE PHK+ P QC NCQ YGH+
Sbjct: 214 ITVEEPHKRINPVQCTNCQEYGHT 237
>UniRef50_Q867Z5 Cluster: Gag protein; n=1; Drosophila virilis|Rep:
Gag protein - Drosophila virilis (Fruit fly)
Length = 1037
Score = 37.9 bits (84), Expect = 0.11
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 435 REPYKMVLVALQPTPE-GKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHS 271
R P M V L P + ++ ++T+ + I VE K+ P QCH CQ +GHS
Sbjct: 582 RRPLNMFEVELAPNGDTNDKVLELKTLGN-QHIEVERQLKRDEPVQCHRCQSFGHS 636
>UniRef50_A4RA56 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 587
Score = 37.5 bits (83), Expect = 0.15
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -2
Query: 250 APDASSV*EITPRPSALAIKKPRR---NRLAASCVRTQGHPANYRGCPR 113
AP +SS+ +TP+PSAL I+K +R +R A C R Q + R C R
Sbjct: 25 APPSSSLSPVTPQPSALRIRKEKRFQVSRACARCKRLQKGCSQSRPCQR 73
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 37.1 bits (82), Expect = 0.20
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 260 CHARPRCVKCLGDHATALC-TRDQKTATEPPSCVLC--PYTGSPRKLPRMPPSPE 105
CHA C C DHAT C +D K PP C C + + R P+ P SP+
Sbjct: 289 CHANWVCAFCAKDHATPACQKKDNKEI--PPVCANCNGQHRATYRGCPKAPKSPK 341
Score = 35.9 bits (79), Expect = 0.46
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 438 GREPYKMVLVALQPT-PEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSS 268
G + + +V+ L P+ K IF+++T+ L + VE K QC CQ +GH++
Sbjct: 230 GEKVWPLVIAHLDPSFAHAKTIFDLQTLGGLK-VTVEPKRKSKFTPQCKRCQKFGHTA 286
Score = 31.9 bits (69), Expect = 7.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 199 AIKKPRRNRLAASCVRTQG-HPANYRGCPRAPK 104
A +K + C G H A YRGCP+APK
Sbjct: 306 ACQKKDNKEIPPVCANCNGQHRATYRGCPKAPK 338
>UniRef50_Q6J4U8 Cluster: Gag protein; n=8; Drosophila
melanogaster|Rep: Gag protein - Drosophila melanogaster
(Fruit fly)
Length = 1047
Score = 37.1 bits (82), Expect = 0.20
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 435 REPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGT--PSQCHNCQLYGHS 271
R P ++ V + P +G + + + SL G V+ K+ + P+QCH CQ +GH+
Sbjct: 749 RNPMRIHEVEVVPKADGSHL-KVLLIKSLGGQTVKVERKRVSKDPTQCHRCQCFGHT 804
>UniRef50_A3NKT8 Cluster: Putative uncharacterized protein; n=2;
Burkholderia pseudomallei|Rep: Putative uncharacterized
protein - Burkholderia pseudomallei (strain 668)
Length = 138
Score = 35.9 bits (79), Expect = 0.46
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = -3
Query: 255 RAPPMRQVFRRSRHGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAP------EPRK*IA 94
RA R+ R +RHG +H+R +N T RP S+ R++P+ P E R A
Sbjct: 33 RAAAARRGTRMARHGGMHARPRNDAATMVARPPSLGRLSPRRPPSTPPRPSRNERRSCAA 92
Query: 93 VSPAKTASELPAQTSKPRHPLCRRLSQRS 7
+PA +S + + R +RS
Sbjct: 93 AAPACRSSPARCRAGRRRAASSAAAKRRS 121
>UniRef50_Q9NBX5 Cluster: Nucleic-acid-binding protein from
transposon X-element; n=2; Drosophila melanogaster|Rep:
Nucleic-acid-binding protein from transposon X-element -
Drosophila melanogaster (Fruit fly)
Length = 501
Score = 35.9 bits (79), Expect = 0.46
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 429 PYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHNCQLYGHSS 268
P M + + K+I ++ +C + + +E K+ QCH CQ GH++
Sbjct: 245 PVNMFFLNIAAAANNKEILAVKALCHMR-VVIEPLRKRNAIVQCHRCQQIGHTA 297
>UniRef50_Q5KF08 Cluster: Expressed protein; n=2; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 494
Score = 35.5 bits (78), Expect = 0.61
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 338 PSKPHIRKAHLASAITANYTGILPSNCHARPRCVKC 231
P P IRK HLAS + N LPS+ +A+PR C
Sbjct: 418 PIIPKIRKGHLASLLVLNPAYTLPSHANAKPRRFFC 453
>UniRef50_Q0MYW9 Cluster: Ankyrin-1-like protein; n=1; Emiliania
huxleyi|Rep: Ankyrin-1-like protein - Emiliania huxleyi
Length = 186
Score = 35.1 bits (77), Expect = 0.81
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 258 SRAP-PMRQVFRRSRHGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAPEPRK*IAVSPA 82
+R P P R R+ R L RS DG L+PV V R+ I AD P P ++++
Sbjct: 49 ARVPSPARLTVRKLREA-LAERSLPTDG---LKPVLVARLAAAIAADPPPPTP-LSIARE 103
Query: 81 KTASELPAQTSKPRHPLCR 25
A++ PA P H + R
Sbjct: 104 MRAADPPAADGSPAHLVLR 122
>UniRef50_UPI0000D5776C Cluster: PREDICTED: similar to
Nucleic-acid-binding protein from mobile element jockey
(ORF1); n=1; Tribolium castaneum|Rep: PREDICTED: similar
to Nucleic-acid-binding protein from mobile element
jockey (ORF1) - Tribolium castaneum
Length = 214
Score = 34.7 bits (76), Expect = 1.1
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = -1
Query: 326 HIRKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALC-TRDQKTATEPPSCVLC-- 156
+I+K + G SNC + +C+KC G H T C D T P C C
Sbjct: 90 YIKKTRITQCHRCQEWGHATSNCRVKLKCLKCAGGHWTRECGISDDAT----PKCANCGG 145
Query: 155 PYTGSPRKLP 126
P+T + P
Sbjct: 146 PHTANNLDCP 155
>UniRef50_UPI0000558409 Cluster: hypothetical protein
BmalF_02004594; n=1; Burkholderia mallei FMH|Rep:
hypothetical protein BmalF_02004594 - Burkholderia
mallei FMH
Length = 245
Score = 34.7 bits (76), Expect = 1.1
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 217 PRPSALAIKKPRRNRLAASCVRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASA 38
P A A + R+ ++ C R G ++ GC + + R+A + ASGP + AS
Sbjct: 133 PNRLAAAASRARQPARSSRCTRQSGPSSSENGCLACSRSHARIAASS---ASGPSVSASV 189
Query: 37 PSV-SQAKPA 11
S+ S PA
Sbjct: 190 ASIGSSVAPA 199
>UniRef50_O44939 Cluster: Gag protein; n=1; Drosophila yakuba|Rep:
Gag protein - Drosophila yakuba (Fruit fly)
Length = 895
Score = 34.7 bits (76), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 266 SNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
+ C PRC+KC G H ++ CT+ + T P +C C
Sbjct: 629 NTCMKPPRCMKCAGQHWSSECTKPRST---PATCSNC 662
>UniRef50_P28167 Cluster: Zinc finger protein 2; n=7;
Sophophora|Rep: Zinc finger protein 2 - Drosophila
melanogaster (Fruit fly)
Length = 3005
Score = 34.7 bits (76), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 401 SLPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYT-GILPSNCHARPRCVKC 231
S PQ+ S SVA P SPS + AS T+++T G + + RP+ V C
Sbjct: 475 SQPQQTPHRSPCSNSVALPVSPSASSVASVGNASTATSSFTIGACSEHINGRPQGVDC 532
>UniRef50_UPI0000D9BC43 Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 233
Score = 34.3 bits (75), Expect = 1.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 138 PQITADAPEPRK*IAVSPAKTASELPAQTSKP----RHPLCRRLSQR 10
P PRK A SPA A +PA + +P R P+CR +SQR
Sbjct: 132 PSAAYPTGRPRKLAAASPAGLAFAVPAPSPRPVDPARRPVCREVSQR 178
>UniRef50_A4RKQ4 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 481
Score = 33.9 bits (74), Expect = 1.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 192 KNRDGTA*LRPVSVHRVTPQITADAPEPRK*IA-VSPAKTASELPAQTSKPR 40
KN+ T LRP TP DAP + ++ PA T P TS+PR
Sbjct: 49 KNKGSTESLRPTDESTTTPTSDNDAPAKQPQVSPADPASTTFTSPVMTSEPR 100
>UniRef50_Q04VL4 Cluster: Glycosyltransferase; n=5; Bacteria|Rep:
Glycosyltransferase - Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197)
Length = 366
Score = 33.5 bits (73), Expect = 2.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 470 LTPYTACTQVAEGSHIKWFWSPSS-LPQRVSKYSTSERSVAFP 345
++ Y VA S + WFWS S + QR+ K+ + V FP
Sbjct: 140 ISNYLRTWDVASASRVDWFWSNSEFVAQRIRKFYRRDAKVIFP 182
>UniRef50_A6SZX1 Cluster: Uncharacterized conserved protein; n=2;
Oxalobacteraceae|Rep: Uncharacterized conserved protein
- Janthinobacterium sp. (strain Marseille)
(Minibacterium massiliensis)
Length = 343
Score = 33.5 bits (73), Expect = 2.5
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 216 HGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAPEPRK*IAVSPAKTASELPAQTSKP 43
HGP S +K + A P+ + PQ + P + + V+ KT PA+T+KP
Sbjct: 162 HGPAGSPAKVEEKLA---PIELSDAAPQAVVETAPPLEVLEVTETKTPEVKPAETAKP 216
>UniRef50_UPI00015B43B0 Cluster: PREDICTED: similar to reverse
transcriptase homolog, partial; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to reverse
transcriptase homolog, partial - Nasonia vitripennis
Length = 1316
Score = 33.1 bits (72), Expect = 3.3
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Frame = -1
Query: 473 RLTPYTACTQVAEGSHIKWFWSPSSLPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAI 294
++ +T+ H+ SP S QR+S+ + E +RK +
Sbjct: 136 KIEKFTSDATAPNKFHLLVHCSPDSKTQRLSQVKKLAHQIIRWEP-----LRKTKVFQCF 190
Query: 293 TANYTGILPSNCHARPRCVKCLGDHATALCTR---DQKTATE-PPSCVLC 156
G +NC+ RCVK +H C R D T+ P CV C
Sbjct: 191 KCQRVGHASANCNLGYRCVKYRNNHKEGECQRKKDDNNANTDTTPECVNC 240
>UniRef50_UPI00006CB82B Cluster: hypothetical protein
TTHERM_00579240; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00579240 - Tetrahymena
thermophila SB210
Length = 1874
Score = 33.1 bits (72), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 266 SNCH-ARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
SNC+ + C KC GD LC+++ T +CV C
Sbjct: 258 SNCNPCKTNCTKCKGDGTCLLCSQNYGLNTSTNTCVKC 295
>UniRef50_Q8LA17 Cluster: PhD-finger protein, putative; n=2;
Arabidopsis thaliana|Rep: PhD-finger protein, putative -
Arabidopsis thaliana (Mouse-ear cress)
Length = 429
Score = 33.1 bits (72), Expect = 3.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 284 YTGILPSNCHARPR--CVKCLGDHATALCTRDQKTATEPPSCVLCP 153
Y +LPS+ RP C KC + +C+R + A C+ CP
Sbjct: 332 YLNLLPSSSRTRPENVCWKCEKEGTLLICSRSECAAKVHKECLNCP 377
>UniRef50_Q10CD7 Cluster: Cullin-4B, putative, expressed; n=8;
Viridiplantae|Rep: Cullin-4B, putative, expressed -
Oryza sativa subsp. japonica (Rice)
Length = 836
Score = 33.1 bits (72), Expect = 3.3
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 404 SSLPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYTGILP 267
++ P+R +S+S + + P SP++PH++KA + +++ + P
Sbjct: 6 ATAPKRPGHFSSSSAAASSPTSPAQPHMKKAKFPGSSSSSSSAAAP 51
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 3.3
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Frame = -1
Query: 275 ILPSNCHARPRCV--KCLGDHATALCTRDQ--KTATEPPSC-VLCPYTGSP----RKLPR 123
++ S+C CV KC+ D +C + + + PSC L YTG+P R++P+
Sbjct: 10957 VVNSDCSRDKSCVNQKCV-DPCPGVCGLNAQCRVSNHLPSCSCLAGYTGNPSSACREIPQ 11015
Query: 122 MPPSPE 105
+PP PE
Sbjct: 11016 LPPPPE 11021
>UniRef50_O17451 Cluster: Gag-like protein; n=1; Culex pipiens|Rep:
Gag-like protein - Culex pipiens (House mosquito)
Length = 466
Score = 32.7 bits (71), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTRDQK 189
NC+ RPRCVKC H + C +K
Sbjct: 298 NCNLRPRCVKCGESHLSEACALPRK 322
>UniRef50_Q7SHM1 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 505
Score = 32.7 bits (71), Expect = 4.3
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = -3
Query: 249 PPMRQVFRRSRHGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAPEPRK*IAVSPAKTAS 70
PP R R R+ PL + S++ GT+ L P+ V P + AP PR + P + +S
Sbjct: 72 PPRRPPQRPPRYPPLPT-SRHTRGTS-LPPL----VIPNNASPAPRPRPLSELGPKEASS 125
Query: 69 ELPAQTSKPRHPLCRRLS 16
+ S PR CR+ S
Sbjct: 126 TVFMNFSLPRPVACRKKS 143
>UniRef50_Q1DZD8 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 174
Score = 32.7 bits (71), Expect = 4.3
Identities = 26/91 (28%), Positives = 38/91 (41%)
Frame = -1
Query: 374 STSERSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALCTRD 195
+TSE + + ES R A + + IT GI+ + ARP + + TRD
Sbjct: 75 TTSETAQSARESSWPETSRHAEIEAVITCASDGIIVALRRARPLIPGLIPPESYKRVTRD 134
Query: 194 QKTATEPPSCVLCPYTGSPRKLPRMPPSPEN 102
+PP TG+P KL + P N
Sbjct: 135 H---AKPPGLKFILATGTPYKLLKSMAKPRN 162
>UniRef50_Q3MIN7 Cluster: Ral guanine nucleotide dissociation
stimulator-like 3; n=13; Theria|Rep: Ral guanine
nucleotide dissociation stimulator-like 3 - Homo sapiens
(Human)
Length = 710
Score = 32.7 bits (71), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 121 CPRAPKINRRVARQNRLRASGPDIKASAPSVSQAKPA 11
CP +P+I RR++ RL A K+S+PS S P+
Sbjct: 509 CPSSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPS 545
>UniRef50_UPI0000F2DEAA Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 254
Score = 32.3 bits (70), Expect = 5.7
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = -2
Query: 250 APDASSV*EIT--PRPSALAIKKPRRNRLAA--SCVRTQGHPANYRGCPRAPKINRRV-A 86
AP+A S T RP AL K P R AA SC G P P + A
Sbjct: 94 APEAPSTASRTRDTRPPALCPKTPDGGRPAARPSCAHGSGREERPLRPPGGPDLGGPAGA 153
Query: 85 RQNRLRASGPDIKASAPSVSQAKP 14
RQN RA PD + S ++ P
Sbjct: 154 RQNGRRAPSPDAAGTDGSAGRSLP 177
>UniRef50_UPI0000F34894 Cluster: KIF26A protein.; n=2;
Laurasiatheria|Rep: KIF26A protein. - Bos Taurus
Length = 1343
Score = 32.3 bits (70), Expect = 5.7
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = -2
Query: 211 PSALAIKKPRRNRLAASCVRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPS 32
P A A + P LAAS R P +RG P PK N + R P + S
Sbjct: 418 PEAAAPRTPVGAPLAASTPRGSPSPDTHRGAPEPPKANADQREEGTTRPELPTLPDKTTS 477
Query: 31 VSQAKP 14
+P
Sbjct: 478 GGGGRP 483
>UniRef50_Q0E2G2 Cluster: Os02g0243900 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os02g0243900 protein -
Oryza sativa subsp. japonica (Rice)
Length = 146
Score = 32.3 bits (70), Expect = 5.7
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = -3
Query: 261 LSRAPPMRQVFRRS--RHGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAPEPRK*IAVS 88
L+ APP+ + RRS R GP S + S P + AP P +
Sbjct: 48 LTAAPPLPRRPRRSSRRRGPASSTRSSPPRAVSSAAASSSSAAPPTSPPAPSPPAPASTP 107
Query: 87 PAKTASELPAQTSKPRH 37
P AS PA + K H
Sbjct: 108 PGPAASPSPATSGKREH 124
>UniRef50_Q179G6 Cluster: Putative uncharacterized protein; n=3;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 324
Score = 32.3 bits (70), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 260 CHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC 156
C +PRC +C G+H A C ++ +T C+LC
Sbjct: 206 CTLKPRCGQCGGNHDVAAC---EEASTSIQKCLLC 237
>UniRef50_A6RCU0 Cluster: Predicted protein; n=8; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1838
Score = 32.3 bits (70), Expect = 5.7
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = -1
Query: 320 RKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLC--PYT 147
R L G + + C+A C C H T C + ++ P C LC P+T
Sbjct: 385 RSCKLKQCYKCQKYGHIGTQCNANETCGYCAEPHNTRDCRKKEEDLNPTPKCALCKGPHT 444
>UniRef50_Q5UYQ6 Cluster: Putative uncharacterized protein; n=1;
Haloarcula marismortui|Rep: Putative uncharacterized
protein - Haloarcula marismortui (Halobacterium
marismortui)
Length = 215
Score = 32.3 bits (70), Expect = 5.7
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = -3
Query: 471 VNSVHCMHTGRGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVETPHKKGTPSQCHN 292
+ HC H R + + A + P GKQ R VC G GTP C N
Sbjct: 70 IRGEHCKHLRR----VAIEITARRVAPPGKQ----RAVCDACGTVTFVAADAGTPHLCGN 121
Query: 291 CQL 283
C+L
Sbjct: 122 CRL 124
>UniRef50_Q4RN83 Cluster: Chromosome undetermined SCAF15016, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF15016, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 648
Score = 31.9 bits (69), Expect = 7.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 157 VRTQGHPANYRGCPRAPKINRR--VARQNRLRASGPDIKAS 41
+R+ G P GCPRA K RR V R+ R+R D A+
Sbjct: 440 IRSSGEPTRAPGCPRAKKRKRRPSVRRKRRVRRKRGDKDAA 480
>UniRef50_Q7NFC0 Cluster: Gll3606 protein; n=1; Gloeobacter
violaceus|Rep: Gll3606 protein - Gloeobacter violaceus
Length = 156
Score = 31.9 bits (69), Expect = 7.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 305 LGVPFLCGVSTAIPERLQTVRMLN-ICLPSGVGWRATRTILYGSLP 439
+GVP LCGV+ + RL R+ + + +G+GW T+ + P
Sbjct: 49 VGVPLLCGVAGGVLARLIFSRLFSRQMIDNGIGWALVLTVSLTAFP 94
>UniRef50_Q4E908 Cluster: Gag protein; n=1; Wolbachia endosymbiont
of Drosophila ananassae|Rep: Gag protein - Wolbachia
endosymbiont of Drosophila ananassae
Length = 281
Score = 31.9 bits (69), Expect = 7.5
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = -1
Query: 338 PSKPHIRKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVL 159
P +P LA G +C C+KC G H T C +K PP C
Sbjct: 155 PFRPPTNALALAQCHRCQKHGHKKGSCRRAFVCMKCAGQHPTTAC---KKPRHVPPRCCN 211
Query: 158 C 156
C
Sbjct: 212 C 212
>UniRef50_Q5JMM1 Cluster: Auxin response factor 3; n=9; BEP
clade|Rep: Auxin response factor 3 - Oryza sativa subsp.
japonica (Rice)
Length = 731
Score = 31.9 bits (69), Expect = 7.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 410 SPSSLPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHARPR 243
S S LP + S Y+ +SV+F ES P + + S + G+LP C A+ R
Sbjct: 515 STSRLPVQYSGYT--HQSVSFGESIGFPEVLQGQEISQTVPPFQGMLPDACSAKSR 568
>UniRef50_Q2JBQ0 Cluster: Putative uncharacterized protein; n=3;
Frankia|Rep: Putative uncharacterized protein - Frankia
sp. (strain CcI3)
Length = 257
Score = 31.5 bits (68), Expect = 10.0
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -2
Query: 277 AFFLVTVTRAPDASSV*EITPRPSALAIKKPRRNRLAASCVRTQGHPAN 131
A F VTV R P A + P ALA+ P NR AA + HPA+
Sbjct: 37 AAFRVTVCRMPSAGLAWQTLSDPGALALVDPESNRAAA---LARPHPAD 82
>UniRef50_Q6UJ38 Cluster: Gag protein; n=4; Drosophila virilis|Rep:
Gag protein - Drosophila virilis (Fruit fly)
Length = 907
Score = 31.5 bits (68), Expect = 10.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 447 TGRGREPYKMVLVALQP-TPEGKQIFNIRTVCSLSGIAVETPHKKGTP-SQCHNCQLYGH 274
+G G + V L P + + + IF IR +C + E P G QCH CQ + H
Sbjct: 519 SGPGTYQPNIFFVELAPDSTKNRSIFEIRNLCKYV-VRFEWPKIDGKNLPQCHRCQRFNH 577
Query: 273 SS 268
++
Sbjct: 578 TA 579
>UniRef50_Q17KW8 Cluster: Zinc finger protein; n=1; Aedes
aegypti|Rep: Zinc finger protein - Aedes aegypti
(Yellowfever mosquito)
Length = 316
Score = 31.5 bits (68), Expect = 10.0
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -1
Query: 386 VSKYSTSERSVAFPESPSKPHIRKAHLASAIT-ANYTGILPSNCHARPRCVKCLGDHATA 210
V Y+ ++ + P++++ LA +I AN ++P C K GD A+
Sbjct: 9 VYSYTVGDQIYQLKPTNDPPNVQEITLAPSIAPANIIQLIPERPFLCDTCSKSFGDSASL 68
Query: 209 LCTRDQKTATEPPSCVLCP 153
T +P SC CP
Sbjct: 69 KAHLVIHTGEKPFSCSECP 87
>UniRef50_A0BI32 Cluster: Chromosome undetermined scaffold_109,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_109,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 354
Score = 31.5 bits (68), Expect = 10.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 148 QGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSV 29
QG A ++ C R+P+I++ + + + S D S P++
Sbjct: 266 QGIEAQFKSCERSPQISQTIMNEGEFKKSPEDTSVSEPNI 305
>UniRef50_A1D0G3 Cluster: MFS transporter, putative; n=4;
Trichocomaceae|Rep: MFS transporter, putative -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 587
Score = 31.5 bits (68), Expect = 10.0
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 263 NCHARPRCVKCLGDHATALCTR-DQKTATEPPSCVL 159
N H P VK G A+A T D TAT PP C+L
Sbjct: 63 NPHFIPETVKVTGVQASAAATTADSDTATGPPYCIL 98
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,706,703
Number of Sequences: 1657284
Number of extensions: 12424363
Number of successful extensions: 40812
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 38571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40755
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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