Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2386
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.37 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   0.84 
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   1.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   3.4  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    25   4.5  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   5.9  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   7.9  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   7.9  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 18/67 (26%), Positives = 25/67 (37%)
 Frame = -2

Query: 214 RPSALAIKKPRRNRLAASCVRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAP 35
           RPS     K  + R   S + +    +  R  PRAP       RQN    SG  ++A   
Sbjct: 336 RPSGKKFNKNSKFRPPGSTISSYSSASTLRRLPRAPGSKVHAERQNSTFNSGISLRALRK 395

Query: 34  SVSQAKP 14
            +    P
Sbjct: 396 EMGNTAP 402


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 138 PQITADAPEPRK*IAVSPAKTASELPAQTSKP 43
           P  T+  P+     A +PA T +  PAQTS P
Sbjct: 105 PASTSSTPKVETAAAAAPAATPAPAPAQTSAP 136


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 464 PYTACTQVAEGSHIKWFWSPSSLPQRVSKYSTSERSVAFPESPSKPHIRKAHLAS 300
           P++ C Q    +    FW   +L      +ST+  +V F  +PS+  IR  HL S
Sbjct: 437 PHSFCNQYKGFAVGNRFWQCRTLSTESLNFSTNLNNVVFVANPSE--IRGLHLPS 489


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 441 RGREPYKMVLVALQPTPEGKQIFNIRTVCSLSGIAVET 328
           R   PY  ++   +P P+   +  +RT+C    IAV++
Sbjct: 540 RPLRPYAQIIY-FRPPPQASLVGRLRTICRNENIAVDS 576


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 458 TACTQVAEGSHIKWFWSP----SSLPQRVSKYSTSERSVAF 348
           T+  +VAE     WF +     S LP R S +S+  RSV F
Sbjct: 260 TSRIKVAEIMQHPWFIADLPTHSRLPSRTSSFSSKHRSVTF 300


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = -1

Query: 362 RSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHARPRCVKCLGDHATALCTRDQKTA 183
           +S    E P++  ++     S +T     I+      +   V   GDH+ A+ T +   A
Sbjct: 72  KSRPLKEGPNQALMKNPLYVSNVTRQVRNIVQQELEKQRIAVNIGGDHSLAIGTVEGVQA 131

Query: 182 TEPPSCVL 159
               +CVL
Sbjct: 132 VYDDACVL 139


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 109 PKINRRVARQNRLRASGPDIKASAPSV 29
           P +  R  R+ +   SGPD  A  P+V
Sbjct: 33  PPVPTRTGRRKKKAQSGPDASAKLPTV 59


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  WAGSSEAVLAGDTAIYFRGS 115
           W G    V+AGD A+Y +G+
Sbjct: 137 WDGRDGIVVAGDIALYAKGN 156


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 396 TPEGKQIFNIRTVCSLSGIAVETPHKKGTP 307
           TP+ + I ++ T  +L+G+ V   ++K TP
Sbjct: 175 TPQPQAIMHLETSSNLTGVTVNPFNRKLTP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,100
Number of Sequences: 5004
Number of extensions: 44339
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)