Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2386
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135... 32 0.28
04_04_0796 + 28129350-28130405 31 0.48
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 30 1.1
05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440 29 1.9
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 29 2.6
08_01_0180 - 1524302-1524877,1525998-1527056 28 3.4
12_02_0412 - 18799217-18801061 28 4.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 4.5
12_01_0026 + 219663-220843,222201-222447,222574-224535 27 5.9
11_01_0026 + 193383-194566,195726-195972,196099-198063 27 5.9
07_03_1592 + 27997033-27997190,27998291-27998365,27998778-27999570 27 5.9
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 27 7.8
06_03_0545 + 21983666-21986086 27 7.8
05_03_0533 + 15117535-15118248 27 7.8
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 27 7.8
12_01_0592 + 4848467-4849164,4849413-4849491 24 9.3
>01_06_0742 -
31611005-31611843,31611930-31612092,31613463-31613538,
31613615-31613731,31613852-31614016,31614100-31614190,
31614824-31614908,31615013-31615195,31615748-31615996
Length = 655
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 410 SPSSLPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHARPR 243
S S LP + S Y+ +SV+F ES P + + S + G+LP C A+ R
Sbjct: 439 STSRLPVQYSGYT--HQSVSFGESIGFPEVLQGQEISQTVPPFQGMLPDACSAKSR 492
>04_04_0796 + 28129350-28130405
Length = 351
Score = 31.1 bits (67), Expect = 0.48
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 217 PRPSALAIKKPRRNRLAASC-VRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKAS 41
PRP+A AI R++LAA+ VR+ P + P +++ VA + P S
Sbjct: 13 PRPAAFAIGATARDKLAAAYHVRSASLPCRFH--PLVVQLDDDVAALRLVIGQSPPAAPS 70
Query: 40 APSVSQA 20
A SVS A
Sbjct: 71 ASSVSAA 77
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQAK 17
G P+ YRG P++ +R A +++ R+ PD ++ A S S+++
Sbjct: 54 GSPSPYRGNPKSRSRSRSPAARSQSRSPVPDPRSQARSRSRSR 96
>05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440
Length = 349
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = -2
Query: 241 ASSV*EITPRPSALAIKKPRRNRLAASC--VRTQGHPANYRGCPRAPKINRRVARQNRLR 68
A+ +++P +A A+ +PR R A+S + Q G RAP+ VA RLR
Sbjct: 42 AAEATQLSPELAA-AVARPRLRRQASSSSPAKQQQQQVGGGGSKRAPQRGLGVAELERLR 100
Query: 67 ASGP---DIKASAPSVSQAKPA 11
G D+ A+ ++ A A
Sbjct: 101 CGGDPFRDLNAAVAAMGDAAAA 122
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 62 GSSEAVLAGDTAIYFRGSGASAVIC 136
G A DTA YFRG+G V+C
Sbjct: 332 GRMGAARGEDTASYFRGTGVHCVVC 356
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 329 VSTAIPERLQTVRM-LNICLPSGVGWRATRTILYGSL 436
+STA+ ERL T+ ++CL SG GW A ++ L
Sbjct: 66 ISTALHERLATLLPDRSVCLGSGHGWVAVHDPIFYEL 102
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 401 SLPQRVSKYSTSERSVAFPESPSK--PHIRKAHLASAI 294
+LP+R+ K++ FP++P K PH +HL +I
Sbjct: 431 ALPRRLQKFTMRSEHYYFPKAPPKMAPHESLSHLEISI 468
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 162 PVSVHRVTPQITADAPEPRK*IAVSPAKTASELPAQTSKPRHPLCRRLS 16
P S TP T P P + +PA A PA +K RHP + S
Sbjct: 130 PYSAPSPTPTPTHTQPRPSPPLLPTPATAAD--PANPNKARHPSSNKSS 176
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 369 IRTVCSLSGIAVETPHKKGTPSQCHNCQLYG 277
+ T+ S SGI E H+ G PS N + G
Sbjct: 437 VATIISASGITAEDHHQGGLPSLLQNGSMMG 467
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 369 IRTVCSLSGIAVETPHKKGTPSQCHNCQLYG 277
+ T+ S SGI E H+ G PS N + G
Sbjct: 438 VATIISASGITAEDHHQGGLPSLLQNGSMMG 468
>07_03_1592 + 27997033-27997190,27998291-27998365,27998778-27999570
Length = 341
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 56 WAGSSEAVLAGDTAIYFRGSGASAVICGVTLCT 154
WA SS+A GD+A YF +G S G+T+ T
Sbjct: 34 WALSSDAGRNGDSAFYFAMTGKSR--AGLTMLT 64
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 245 RCVKCLG-DHATALCTRDQKTATEPPSCVLCPYTG 144
RC +CLG H A C+ +PP+C C Y G
Sbjct: 70 RCFRCLGLGHLKASCS-------QPPTCYRCWYPG 97
>06_03_0545 + 21983666-21986086
Length = 806
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 381 QIFNIRTVCSLSGIAVETP 325
Q+ N+R VC ++GI V TP
Sbjct: 276 QLCNVRGVCGINGICVYTP 294
>05_03_0533 + 15117535-15118248
Length = 237
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 340 DSGKATDRSDVEYLLTLWGRLE 405
+ GK D+ DVE LL W RL+
Sbjct: 171 EEGKVRDQQDVEELLRCWERLK 192
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 71 EAVLAGDTAIYFRGSGASAVICGVTLCTDTGRS*AVPSRFFDRECRGPWR 220
EA +A A + A+A + T GR+ +PSRF D PW+
Sbjct: 71 EAEVASPAAASRAAAAAAAASRPPVVRTSRGRAQVLPSRFNDSVLIDPWK 120
>12_01_0592 + 4848467-4849164,4849413-4849491
Length = 258
Score = 24.2 bits (50), Expect(2) = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 356 VAFPESPSKPHIRKAHLASA 297
+A PE+P++PH R H S+
Sbjct: 70 LAEPEAPARPHGRPGHRRSS 89
Score = 21.0 bits (42), Expect(2) = 9.3
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -1
Query: 407 PSSLPQRVSKYSTSERSVAFPESPS 333
P P R TS SV E PS
Sbjct: 40 PRDAPHRHGHQRTSSESVLIDEQPS 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,731
Number of Sequences: 37544
Number of extensions: 387639
Number of successful extensions: 1366
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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