Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2386
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 1.7
Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical pr... 29 2.3
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.3
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.3
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 4.0
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.0
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 4.0
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 4.0
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 4.0
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.0
AL021176-2|CAA15974.2| 267|Caenorhabditis elegans Hypothetical ... 28 4.0
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 4.0
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 4.0
U64859-7|AAC69095.1| 344|Caenorhabditis elegans Serpentine rece... 27 5.3
Z95391-1|CAB08739.1| 360|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF100670-1|AAN73858.1| 420|Caenorhabditis elegans Puf (pumilio/... 27 7.0
AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical ... 27 7.0
U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical pr... 27 9.2
U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical pr... 27 9.2
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 27 9.2
U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone... 27 9.2
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 27 9.2
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 27 9.2
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 27 9.2
AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear recep... 27 9.2
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 266 SNCHARPR-CVKCLGDHATALCTRDQKTATEPPS 168
S C +RPR C C G+H T C + AT P+
Sbjct: 359 SKC-SRPRTCNHCKGNHHTVFCQSHNRNATRNPN 391
>Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical
protein C17E4.3 protein.
Length = 431
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 374 STSERSVAFPESPSKPHIRKAHLASAITANY-TGILPSNCHARPRCVKCLGDHATALCTR 198
ST S PES S+ +RK H ++ +++ TG++ + ++ L +L T
Sbjct: 331 STRRESGISPESSSRRDMRKTHSVYSVCSSFGTGVMSCSTPVADNNLRTLTPSPISLSTF 390
Query: 197 DQKTATEP 174
TEP
Sbjct: 391 KSGCPTEP 398
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 386 VSKYSTSERSVAFPESPSKPHIRKAHLASAITANY 282
VS+YS S SV+ P +PHI + + +T Y
Sbjct: 3530 VSEYSESSTSVSREVRPDEPHIIETTTTTTVTREY 3564
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 386 VSKYSTSERSVAFPESPSKPHIRKAHLASAITANY 282
VS+YS S SV+ P +PHI + + +T Y
Sbjct: 3530 VSEYSESSTSVSREVRPDEPHIIETTTTTTVTREY 3564
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 120 APEPRK*IAVSPAKTASELPAQTSKPRHP 34
APEP A +PA A+ +PAQ + P P
Sbjct: 194 APEPAPEAAPAPAPEAAPVPAQDAAPAAP 222
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 176 PRKEREPRVCYNCQQPGHTS 195
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS**LSRAPPMRQVFRRSRHGPLHSRSKNRDG 178
P K+ P C+NCQ GH+ SR P + R R+G DG
Sbjct: 389 PKKEREPRVCYNCQQPGHN----SRDCPEERKPREGRNGFTSGFGGGNDG 434
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 275 PKKEREPRVCYNCQQPGHNS 294
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS**LSRAPPMRQVFRRSRHGPLHSRSKNRDG 178
P K+ P C+NCQ GH+ SR P + R R+G DG
Sbjct: 389 PKKEREPRVCYNCQQPGHN----SRDCPEERKPREGRNGFTSGFGGGNDG 434
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 275 PKKEREPRVCYNCQQPGHNS 294
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = -3
Query: 258 SRAPPMRQVFRRSRHGPLHSRSKNRDGTA*LRPVSVHRVTPQITADAPEPRK*IAVSPAK 79
SR PP R+ RSR RS++R + PV R + + +P P++ + ++
Sbjct: 98 SRTPPRRR--SRSRDRKRSRRSRSRSSSRSRSPVRESRRRSE--SRSPSPKRDLKREASR 153
Query: 78 TASELPAQ 55
+ S LPA+
Sbjct: 154 SRSPLPAK 161
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 176 PRKEREPRVCYNCQQPGHTS 195
>AL021176-2|CAA15974.2| 267|Caenorhabditis elegans Hypothetical
protein Y43E12A.2 protein.
Length = 267
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Frame = -1
Query: 236 KCLGDHATALCTR----DQKTATEPPSCVLCPYTGSPRK 132
KC G+ LC R A EP SC+ C P K
Sbjct: 188 KCYGEFTCQLCKRKWNSQNSVANEPQSCIKCHVPVFPHK 226
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 176 PRKEREPRVCYNCQQPGHTS 195
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS**LSRAPPMRQVFRRSRHGPLHSRSKNRDG 178
P K+ P C+NCQ GH+ SR P + R R+G DG
Sbjct: 389 PKKEREPRVCYNCQQPGHN----SRDCPEERKPREGRNGFTSGFGGGNDG 434
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 327 PHKKGTPSQCHNCQLYGHSS 268
P K+ P C+NCQ GH+S
Sbjct: 275 PKKEREPRVCYNCQQPGHNS 294
>U64859-7|AAC69095.1| 344|Caenorhabditis elegans Serpentine
receptor, class h protein11 protein.
Length = 344
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 190 KPRRNRLAASCVRTQGHPANYRGCPRAPKINRRVARQNR 74
KP R ++ +R Q P+N RG + R++ QNR
Sbjct: 301 KPLREKILPFKIRIQTQPSNLRGASQDRFSTSRLSSQNR 339
>Z95391-1|CAB08739.1| 360|Caenorhabditis elegans Hypothetical
protein H09F14.1 protein.
Length = 360
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 389 RVSKYSTSERS-VAFPESPSKPHIRKAHLASAITANYTG 276
R+S TSERS + FP +PS+ + K ++A++ G
Sbjct: 309 RISYRMTSERSTIRFPNTPSRANSPKLTASNAVSVPLLG 347
>AF100670-1|AAN73858.1| 420|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 4 protein.
Length = 420
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 154 RTQGHPANYRGCPRAPKINRRVARQNRLRASGP--DIKASAPSVS 26
R HP + CP APK N+ A R P +AS PS++
Sbjct: 51 RNAQHPLGSK-CPNAPKSNKATATSYHQRPDTPRYQQRASTPSMT 94
>AF003138-1|AAK21371.3| 469|Caenorhabditis elegans Hypothetical
protein F12B6.3 protein.
Length = 469
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 353 AFPESPSKPHIRKAHLASAITANYTGILPSN 261
+F E +KP + A + I ANY+ LP N
Sbjct: 20 SFVEKCTKPRLTPAAILDVIMANYSRSLPGN 50
>U41748-2|AAM51524.1| 639|Caenorhabditis elegans Hypothetical
protein C31H2.1b protein.
Length = 639
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 239 RIGGARDSY*EECPYNWQLW--HWLGVPFLCGV 331
R+G DS +C +W LW +L +P++C +
Sbjct: 309 RLGTTDDSVLVKCIEDWLLWLFQYLPLPYICRI 341
>U41748-1|AAA83335.3| 696|Caenorhabditis elegans Hypothetical
protein C31H2.1a protein.
Length = 696
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 239 RIGGARDSY*EECPYNWQLW--HWLGVPFLCGV 331
R+G DS +C +W LW +L +P++C +
Sbjct: 366 RLGTTDDSVLVKCIEDWLLWLFQYLPLPYICRI 398
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQ 23
G P N +G PR P Q +R GP + P V Q
Sbjct: 485 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP-RTQNPGVQQ 524
>U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 22 protein.
Length = 579
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 398 LPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHA 252
LP+ V+K STS R + P + S R H+ S+ TAN +C A
Sbjct: 72 LPEIVNKASTSPRGMPSPLTDS----RSCHVCSSPTANTLHFGGRSCKA 116
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQ 23
G P N +G PR P Q +R GP + P V Q
Sbjct: 425 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP-RTQNPGVQQ 464
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQ 23
G P N +G PR P Q +R GP + P V Q
Sbjct: 422 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP-RTQNPGVQQ 461
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 145 GHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSVSQ 23
G P N +G PR P Q +R GP + P V Q
Sbjct: 485 GRPQNQQGGPRGPPQQYNQVAQGGVRMQGPP-RTQNPGVQQ 524
>AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 555
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 398 LPQRVSKYSTSERSVAFPESPSKPHIRKAHLASAITANYTGILPSNCHA 252
LP+ V+K STS R + P + S R H+ S+ TAN +C A
Sbjct: 48 LPEIVNKASTSPRGMPSPLTDS----RSCHVCSSPTANTLHFGGRSCKA 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,925
Number of Sequences: 27780
Number of extensions: 282027
Number of successful extensions: 878
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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