Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2386
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = -1

Query: 419 WFWSPSS--LPQRVSKYSTSERSVAFPESPSKPH 324
           W W      +PQ +    TS  S+ FP      H
Sbjct: 458 WCWDTRKEYIPQNLGVIGTSNLSLVFPNDIKVDH 491


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 293 LWHWLGVPFLCGVSTAIPERLQTVRMLNIC 382
           L +W+  P  C    A      T  +LN+C
Sbjct: 88  LGYWVFGPRFCDTWIAFDVMCSTASILNLC 117


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 461 YTACTQVAEGSHIKWFWSPSSLPQRVSKYSTSERSVAFPESP 336
           Y     +  GS+I      +SLP  V  Y+T ++S  F   P
Sbjct: 41  YAKLAAIKSGSYIPG----ASLPIDVDVYNTEQQSTVFVAIP 78


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 152 YTGSPRKLPRMPPS 111
           Y+GSP +LP+  P+
Sbjct: 372 YSGSPTELPKHLPT 385


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 377 ICLPSGVGWRATRT 418
           IC P  VGW+  R+
Sbjct: 196 ICFPPLVGWKDKRS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,527
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)