Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2385
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    30   0.24 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.3  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   5.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.1  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.1  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 487 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 398
           +SRH+  L     + F  ++HGM PC  GL
Sbjct: 46  ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 98   SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 235
            +E+ + +    ++ +K+N+ K  +LL  E  R TR+  ++  LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 383 YIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTV 562
           Y      E A   A +++    T     F  +     + AHGQ L    E + +C A TV
Sbjct: 236 YYKSANGESALVSACKVKAVDTTAAGDTF--IGAFSNSIAHGQPLKDSLEFAAKCSAITV 293

Query: 563 LEAGAYASL 589
              GA +S+
Sbjct: 294 QRKGAASSI 302


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 615  SKQATRPAAKEAYAPASSTVRASHLPLSS 529
            ++Q    AAKE Y P + TVR  H+ L S
Sbjct: 2855 NRQLHEEAAKEQYPPLNITVRRDHVFLDS 2883


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/74 (14%), Positives = 35/74 (47%)
 Frame = -1

Query: 325 TVMASVSLWYFEYFSQSSYAARTIATISLIISMSETMLLLTVSCYPKYF*VEEDGCLLIF 146
           T+ +   LW+F +   +   +     ++   ++ ++    +VSC+   +  + +   ++F
Sbjct: 116 TLSSLPPLWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFSLWFRQTNIVWMVF 175

Query: 145 LIRIFYRCHLSIFN 104
           +   ++  ++S FN
Sbjct: 176 IAVTYFASNMSFFN 189


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 582 AYAPASSTVRASHLPLSSQSCKSI--CPCAHAFFSRD 478
           A AP  +++R     L++ SC+ I  CP  H FF  D
Sbjct: 675 ASAPPDTSLRV--WDLNTGSCRDILKCPLGHIFFQHD 709


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 423 PCNCVRKLTLNREKSFILCLD*RKHVHMGRCFCSFVRKAAGAKRVR 560
           PCN  R+  ++RE+  I       H    +    FVR  +G +R R
Sbjct: 271 PCNLTRQEYVSRERHLIATAFGLTHTFNTKVGNDFVRGVSGGERKR 316


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = -1

Query: 550 FAPAAFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSI 371
           F+    L   Q  +P+ T  L +      +S F       L G+   PL L   Y+ + +
Sbjct: 291 FSAYFLLNAYQASVPIYTSMLYN------YSSFQAGNFLSLAGIINVPLLLIFSYLTRYL 344

Query: 370 LGIVGRKVGSCDITTTVMASVSLWYF-EYFSQSSYAARTIATISLIISMSETMLLLTVSC 194
                  +G C     ++  +++ Y  + F Q  +   T+      I+ S ++ LLT   
Sbjct: 345 TDRDIILLGCCLNIVCMVIHITIHYTGKEFVQPYFIIYTLVFFGSSIANSPSVSLLTKVL 404

Query: 193 YPKY 182
           +PKY
Sbjct: 405 HPKY 408


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 400 LQQRYVQQSILGIVGRKVGSCDITTTVMASVSLWYFEYFSQSSY 269
           L  + +  S + I+G+    C +    +A V L +FE+  ++SY
Sbjct: 620 LDMKLLNGSSILILGKLKEKCFLCEICLADVPLTFFEHQQKNSY 663


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  VFNLINDKKNCFKYIT*TLVVHINMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFR 190
           V+  +  K  C++ +  TL+   +++  E  I+N   +A++ +    E++ IL   E  R
Sbjct: 21  VYQALLKKSTCYQEVAATLISKCSLLNTELTIDNRIHSAIQMTLCDFERSQILAPSECVR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,693
Number of Sequences: 5004
Number of extensions: 51837
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)