Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2385
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 35 0.062
03_05_0543 - 25404630-25405408,25405461-25405605 30 1.3
05_05_0152 + 22762994-22763326,22763857-22763989,22764281-227643... 30 1.8
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 29 2.3
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 29 3.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 29 3.1
09_02_0468 - 9608922-9610061 28 7.1
06_01_0677 + 4965813-4966220 28 7.1
02_04_0287 + 21600047-21600478 28 7.1
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127... 28 7.1
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 27 9.4
05_06_0036 - 25090942-25092639 27 9.4
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 34.7 bits (76), Expect = 0.062
Identities = 37/149 (24%), Positives = 58/149 (38%)
Frame = +2
Query: 152 EKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXXXXXXXXXPQGDRRHYRRR 331
EK + ++ + + R++Q QHGLRH DY G R Y +R
Sbjct: 21 EKPLVRFSINVLELMREAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFLHG-RGKYTKR 79
Query: 332 DVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQ 511
++T + +T + RL P ++ + + R +KA
Sbjct: 80 NITESTVT----DVRLFPSP-------------------SKSIYYYRHICRFRKAVKWAT 116
Query: 512 MLLQLCEESGRCEARTVLEAGAYASLAAG 598
+ LC G ++RT LEA AYAS G
Sbjct: 117 LFSHLCSLKG--DSRTSLEAEAYASYMKG 143
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 629 PLFATPSKQHAPQPKKRTRPPLAPY-ALRTCRFPHKAAKASA 507
P TP Q PQP+ R RPP AP +RT P + A A A
Sbjct: 123 PSPVTPPPQQPPQPEPR-RPPAAPLPGVRTPPSPPRRAPAPA 163
>05_05_0152 +
22762994-22763326,22763857-22763989,22764281-22764362,
22764786-22764939,22765028-22765162
Length = 278
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -1
Query: 571 RL*HRTRFAPAAFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQ-LHGMSPCPLGLQ 395
R HR + P+ T+ ++H+ +C + H++ L SFL Q L+G+ PC
Sbjct: 170 RFCHRL-YRPSTVTTEYREHVKDLSCLSKDFHRIVLVDNNPYSFLLQPLNGI-PCLTFSA 227
Query: 394 QRYVQQSILGIV 359
+ V ++G++
Sbjct: 228 GQPVDDQLMGVI 239
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -1
Query: 547 APAAFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLHGMSP-CPLGLQQRYVQQSI 371
A +FLT +++ MC FLQ R + R S + + + P QQ V SI
Sbjct: 137 ARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSI 196
Query: 370 LGIVGRKVG 344
L G G
Sbjct: 197 LAASGHHSG 205
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Frame = +2
Query: 299 PQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 442
PQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410
Query: 443 ANTEPRK 463
A ++ R+
Sbjct: 1411 AQSQNRR 1417
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Frame = +2
Query: 299 PQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 442
PQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410
Query: 443 ANTEPRK 463
A ++ R+
Sbjct: 1411 AQSQNRR 1417
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 632 RPLFATPSKQHAPQPKKRTRPPLAPYALRTC 540
RP A P+ APQP+ R PP P R C
Sbjct: 281 RPPIAVPA---APQPENRVAPPPPPPRARRC 308
>06_01_0677 + 4965813-4966220
Length = 135
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 428 QLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCE-ARTVLEAGAYASL 589
QLR + E + + LV L + AHG+ +L +GR A T+L A+ L
Sbjct: 37 QLRGVGSEEVHRLWELVEDLVGSVAHGKRILSAAAHAGRTSLAPTLLGGEAHRGL 91
>02_04_0287 + 21600047-21600478
Length = 143
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 603 TRPAAKEAYAPASSTVRASHLPLSSQSCK 517
T E Y P SS ASH P S++ C+
Sbjct: 54 TTMCGTERYPPRSSPTPASHAPASARRCR 82
>01_05_0630 -
23811576-23811728,23812473-23812561,23812644-23812764,
23812867-23812992,23813399-23813505,23813742-23813856,
23815071-23815274
Length = 304
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 618 NSKQATRPAAKEAYAPASSTVRASHLPLSSQSCKSICP 505
+S Q+T+PAA+ + P++ VRA S++S + P
Sbjct: 81 SSSQSTKPAARSSATPSNENVRARDSGSSARSTAASQP 118
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 160 THPPQLRNISDN-KRQSAAAWSPTC*LSEISWLLFAPHKKTAKSTQNTTGRQTPLPS 327
T PP R+ S KRQ +AA P L +++ LL + T TTGR PLPS
Sbjct: 9 TPPPSERHRSPKVKRQRSAAAQP---LGDVTNLLLP-----STPTNPTTGRPRPLPS 57
>05_06_0036 - 25090942-25092639
Length = 565
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 527 CEESGRCEARTVLEAGAYASLAAGRVACLELQTMG 631
C ESG T L+A A AAGRV T+G
Sbjct: 231 CRESGFVLTATALQAAVAADEAAGRVPLFLCATVG 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,727,488
Number of Sequences: 37544
Number of extensions: 368705
Number of successful extensions: 1290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -