Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2385
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical ... 30 1.2
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 30 1.2
AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O s... 30 1.6
AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan sulph... 30 1.6
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.4
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.4
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.4
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 27 8.5
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 27 8.5
>Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical
protein F55C5.8 protein.
Length = 622
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Frame = +2
Query: 146 KNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXXXXXXXXXPQGDRRHYR 325
+ E+ P + I ++ +D+QQQHGLRH DY +
Sbjct: 10 ETEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKK 69
Query: 326 RR-DVTTTHLTANNAEN-RLLYIPLLQAERAWAHAM--QLRQEANTEP-RKKFHLVSRLK 490
R+ L+ + +N + L + ++ER +A AM ++ E N E RKKF +++ L+
Sbjct: 70 RKAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLR 129
Query: 491 KACAHGQMLLQLCEESGRCEARTVLEAGAYASLAAG 598
KA H L ++ +ES R +A T LEA AYA+ G
Sbjct: 130 KAVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRG 165
>AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical
protein Y4C6B.4b protein.
Length = 152
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 454 TEKKVSSCVSTEESMCTWADAFAAL*GKRQVRSAYGARGGRVRFFGCG 597
T K + TE+ WA AF + G + Y G R+ FF G
Sbjct: 51 TLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYVKYGARIPFFSAG 98
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 454 TEKKVSSCVSTEESMCTWADAFAAL*GKRQVRSAYGARGGRVRFFGCG 597
T K + TE+ WA AF + G + Y G R+ FF G
Sbjct: 51 TLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYVKYGARIPFFSAG 98
>AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O
sulfotransferase HST-6 protein.
Length = 362
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 526 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 425
K Q H C C +S ++ LFSR+S ++ LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141
>AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan
sulphotransferase protein 6 protein.
Length = 362
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 526 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 425
K Q H C C +S ++ LFSR+S ++ LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 163 GCLLIFLIRIFYRCHLSIFNFTLLTYHINMNNQCLSYVLKTIFFII 26
G LIFL + C+LSIF F L +H+N + + V I++ +
Sbjct: 28 GIPLIFL----WFCYLSIFPFFLAVFHLNKEKEKETAVYHIIYYFV 69
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 95 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 226
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 95 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 226
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 95 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 226
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 95 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 226
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVNGGSASAGGCDACCLPGAA 105
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVNGGSASAGGCDACCLPGAA 105
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVTGGAASAGGCDACCLPGAA 105
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVTGGSASAGGCDACCLPGAA 105
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVTGGSASAGGCDACCLPGAA 105
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVTGGSASAGGCDACCLPGAA 105
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 538 RQVRSAYGARGGRVRFFGCGACCLLGVA 621
RQ G GG GC ACCL G A
Sbjct: 78 RQAGYDAGVTGGSASAGGCDACCLPGAA 105
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 559 GARGGRVRFFGCGACCLLGVA 621
G GG GC ACCL G A
Sbjct: 52 GVNGGSASTGGCDACCLPGAA 72
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 80 NMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHAD 235
N++ + E NGKV E KK + + + ++ T D ++ GLRH +
Sbjct: 63 NILCNKCERVNGKVKRCEAHKKKRKARKVRKDGDVADDTSDREKLGGLRHVN 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,799
Number of Sequences: 27780
Number of extensions: 306524
Number of successful extensions: 1056
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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