Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2385
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 431 VAWHEPMPSRLAAAVCTAIYSRHCWP 354
           + WHEP+P      + + + SR  WP
Sbjct: 261 INWHEPIPEAYFPKLDSLVASR-TWP 285


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 522 CKS-ICPCAHAFFSRDTR 472
           C S I PC +A FS+D R
Sbjct: 53  CNSAINPCIYALFSKDFR 70


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 522 CKS-ICPCAHAFFSRDTR 472
           C S I PC +A FS+D R
Sbjct: 501 CNSAINPCIYALFSKDFR 518


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 83  MVGQESEIENGKVTAVENSDKKNEKAPILLNLEIF 187
           + G+ SE+ N KV  +E    +   A I  NL+++
Sbjct: 83  VAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,218
Number of Sequences: 438
Number of extensions: 3854
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)