Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2383
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    31   0.19 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.78 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   1.8  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   1.8  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   5.5  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   7.3  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   7.3  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 529 PDGTWQKDLWKRTVDDRVAPGSMDEL 606
           P  T  KD+WK TVD + AP  ++EL
Sbjct: 199 PSMTPPKDMWKLTVDPKDAPDEVEEL 224


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 309  FVLNIFFYIFIALVGSIRPPY 371
            F+++ F YIFI +V SI PPY
Sbjct: 1187 FLISCFQYIFIGVVLSIGPPY 1207


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 658 IIKYDIINYIAPPGYRSRVHPYYLEPRG 575
           + K ++IN +   G+ SR +PYY+ P+G
Sbjct: 116 VSKTEVINLLESAGF-SRSNPYYIVPQG 142


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 264 PSNIIKNVTNLYHFEINSE*KTNTNSEFEENHY*LNSIVRTIIFVN*NVF*TSRSYKIND 85
           P NI K   N  HFE+  E  +  NS+  E     N++  TI+ V  +   +  S K ++
Sbjct: 662 PENIEKLKQNDDHFEVTEEITSTINSKISEKQE--NNVAETILEVTSSPKSSENSQKQSE 719

Query: 84  I 82
           I
Sbjct: 720 I 720


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 505 RGGELIP*PDGTWQKDLWKRTVDDRVAP 588
           +GG+  P  DGT  + +WK+  +D ++P
Sbjct: 506 QGGD--PLGDGTGGESIWKKDFEDEISP 531


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 115 EDILINKYYCSYYAVQLV 168
           E +L+ KY  SY A+QLV
Sbjct: 99  ESVLVQKYQSSYPAIQLV 116


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 644 YNKLHRTARLSE*SSSILPGATRSSTVRFQRSFCHVPSGYGMSSPPR 504
           YN  H  + + E    +L G+TRS +V     +CH    Y    PPR
Sbjct: 152 YNPAHPWSVIPE-DRKVLVGSTRSDSVFVNTVYCHTCHLY---RPPR 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,364
Number of Sequences: 5004
Number of extensions: 58351
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)