Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2383
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0118 - 20964931-20966349                                         29   3.3  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    29   4.3  
06_01_0292 + 2136637-2137050,2137162-2137671                           28   7.6  
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    28   7.6  

>09_06_0118 - 20964931-20966349
          Length = 472

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = -1

Query: 564 AFPEVFLPRTIRLWNEL---PSTVFPARYDMSFFKRGLWKVLSGRQWRGSAPALLKSMGN 394
           AF  V LP  +   N+    P  V    YD+     G  + + G +WR     LL++ G+
Sbjct: 34  AFTIVRLPSHVHAQNKSLYEPRVVSVGPYDLG---SGSTRAMQGHKWRFLRDFLLQNAGD 90

Query: 393 GNHSPSGGMVAVCCLQ 346
           G     GG     CL+
Sbjct: 91  GGGGGGGGGHLDACLR 106


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 522 NELPSTVFPARYDMSFFKRGLWKVLSG 442
           N+   T +  RY+M+F K G WK+  G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 605 SSSILPGATRSSTVRFQRSFCHVPSGYGMSSP--PRCFPRAMTCPSSNEACGKY*VVGSG 432
           +S++ P ++ ++T+    S   V +      P   +C P++ T  SS+        V  G
Sbjct: 211 ASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAVAGG 270

Query: 431 VALPRHC 411
             LP HC
Sbjct: 271 NVLPSHC 277


>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 465 GLWKVLSGRQWRGSAPALLKSMGNGNHSPSGGMVAVCCLQGQ 340
           G ++   GRQW G        +G+GN++PS       CL GQ
Sbjct: 123 GRYRQYQGRQWDGCG------VGHGNYNPSYTCSCPHCLHGQ 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,887
Number of Sequences: 37544
Number of extensions: 396553
Number of successful extensions: 905
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)