Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2382
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.3  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   2.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   6.9  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    25   6.9  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   6.9  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.1  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   9.1  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   9.1  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 GGHYVLARFRPSAVSPRAALTADVDELAA 191
           G H V+A+  P  ++  +  T DVDE++A
Sbjct: 795 GKHLVMAKTEPFVITATSMNTTDVDEVSA 823


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 628 PPRHPSTRTCPLTECPVVTDARLAFHLAGQHAAGTPP 518
           PP +P  +  P   CP+ T A+  FH  G    G PP
Sbjct: 364 PPSYPDLKI-PGVNCPIPTGAQWGFHPGGW---GKPP 396


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 304 AHPHRLAIFTFSLSHNRRTARQSYGAHQHSFEK 206
           A+P  L  ++ S  +++R  R+   A+ H+FE+
Sbjct: 346 ANPSELQSYSASHEYDKRRKREQRDANSHAFEQ 378


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 1   TRVVSYPKSLSALCYASRSTPASIQASPALTLESSEVITSSLGFGPQRFHLAPR 162
           T+ V+   SL  L   +++TP + + + +++ +   ++   +  G  RF+LAP+
Sbjct: 200 TQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKMESGFLRFYLAPK 253


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 409 LPR-CSPLKTPPVKCGVRAAGPA 474
           LPR  SPLKT PVK  V    P+
Sbjct: 546 LPRVASPLKTSPVKLAVTPQAPS 568


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 624 PAIPVPERVR*PNARL*LTPGSPFTWP 544
           P IPV  +V  PN+ L + P +P T P
Sbjct: 367 PTIPVSLQVLTPNSSLKVDPTTPLTAP 393


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 245 PPELRRAPAQFRKVSGHRCSEFVDVRCQRGAR*NR*GP 132
           PP L+ +   F  V GH   + VD+  Q  +R    GP
Sbjct: 515 PPILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGP 552


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 616 PSTRTCPLTECPVVTDA 566
           PS ++  +T+CP++TDA
Sbjct: 195 PSLKSINITQCPLLTDA 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,742
Number of Sequences: 5004
Number of extensions: 43882
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)