Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2382
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0606 - 4461646-4462623                                           29   2.3  
09_06_0262 - 21921647-21922796,21922897-21923423                       29   3.1  
05_03_0680 - 16883602-16884090,16885787-16886011                       29   3.1  
05_03_0367 + 13124881-13125489,13125543-13126310                       29   3.1  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     29   3.1  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    29   3.1  
06_03_0340 + 19703574-19704329                                         28   5.4  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    28   5.4  
01_06_1335 - 36393086-36393100,36393439-36393571,36394693-36394823     28   7.1  
08_01_0379 + 3371125-3371988                                           27   9.4  

>03_01_0606 - 4461646-4462623
          Length = 325

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 510 QAPCRCYRMLSH-RRPRRPHSTLHW 439
           Q+P  C+ +L H R P  P +T HW
Sbjct: 151 QSPSSCFEVLVHDRHPNHPFATPHW 175


>09_06_0262 - 21921647-21922796,21922897-21923423
          Length = 558

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 RPSAVSPRAALTADVDELAAAVATDFSKLCWCA 230
           R SAV   A L A  ++L+AAVA   ++LC+ A
Sbjct: 358 RQSAVDDMAGLDACAEKLSAAVAMPVTELCFLA 390


>05_03_0680 - 16883602-16884090,16885787-16886011
          Length = 237

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +3

Query: 108 GHYVLARFRPSAVSPRAALTADVDELAAAVATDFSKLCWCAP*LWR 245
           GHYV    R S          +   LAA +     +LC C P LWR
Sbjct: 96  GHYVAKAVRESLPPALLRRWREAVTLAALIDGGEKRLCECRPDLWR 141


>05_03_0367 + 13124881-13125489,13125543-13126310
          Length = 458

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 201 WPPLQRVRRRPLSTRREVKPLRAETERGRND 109
           WPP    +  PL TRR ++P RA+  R  +D
Sbjct: 164 WPPPDSSKPLPLLTRRGIEPWRAKRPRLPSD 194


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 96  RELGGH-YVLARFRPSAVSPRAALTAD 173
           RELG H  VLAR  PSAV+ RAA   D
Sbjct: 82  RELGKHGLVLARASPSAVAVRAAAWCD 108


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = -2

Query: 498 RCYRMLSHRRPRRPHSTLHWRRFQ--RRTAGQRCNLNTVWT----QF*RPALARCTKPC* 337
           +CY  +  ++PR+PH     R            C +N V T    ++    +  CT+ C 
Sbjct: 361 KCYTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCY 420

Query: 336 RWILQSTHPSLH 301
            ++L++   +LH
Sbjct: 421 VYLLKTKDEALH 432


>06_03_0340 + 19703574-19704329
          Length = 251

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 30  LGSLLRFSQYTC*HSGFAGSHARELGGHYVLARFRPSAVSPRAALTADVDELAAAVATD 206
           L + L +  Y    + F GS + ++   Y  AR+    ++ RAA  AD D    AVA +
Sbjct: 17  LATRLAYDYYGVVAATFTGSFSLQIFLFYCFARWYRHTIAARAAADADGDGGGGAVADE 75


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 TFRNCAGARRNSGGPSAC 258
           TF NC GA +NS G S C
Sbjct: 557 TFHNCKGAVKNSDGSSPC 574


>01_06_1335 - 36393086-36393100,36393439-36393571,36394693-36394823
          Length = 92

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 564 GSPFTWPGSTPRVRHLVFQAPCRC 493
           GSP TW G + RV  LVF A   C
Sbjct: 6   GSPGTWSGLSLRVGQLVFAAASVC 29


>08_01_0379 + 3371125-3371988
          Length = 287

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 270 HCHTTGGRPARVTARTSTVSKSQWPPLQRVR 178
           HCH  GGR     +  + +  + WP   RV+
Sbjct: 166 HCHRHGGRDISFASAATAMPAAAWPLFGRVQ 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,690
Number of Sequences: 37544
Number of extensions: 389706
Number of successful extensions: 1192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)