Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2382
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040501-1|AAH40501.2| 1700|Homo sapiens leucine rich repeat con...    32   1.5  
BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat con...    31   3.4  
AB011135-1|BAA25489.3| 1652|Homo sapiens KIAA0563 protein protein.     31   3.4  

>BC040501-1|AAH40501.2| 1700|Homo sapiens leucine rich repeat
           containing 37A protein.
          Length = 1700

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 1   TRVVSYPKSLSALC---YASRSTPASIQASPALTLESSEVITSSLGFGPQRFHLAPR*QR 171
           TR +S P+S        Y+S  TP      P L ++S E    S   GP +FHL P  Q 
Sbjct: 167 TRQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQN 226

Query: 172 TST 180
             T
Sbjct: 227 PET 229


>BC043145-1|AAH43145.1| 1634|Homo sapiens leucine rich repeat
           containing 37, member A3 protein.
          Length = 1634

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 43  YASRSTPASIQASPALTLESSEVITSSLGFGPQRFHLAPR*QRTST 180
           Y+S  TP      P L ++S E    S   GP +FHL P  Q   T
Sbjct: 184 YSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPET 229


>AB011135-1|BAA25489.3| 1652|Homo sapiens KIAA0563 protein protein.
          Length = 1652

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 43  YASRSTPASIQASPALTLESSEVITSSLGFGPQRFHLAPR*QRTST 180
           Y+S  TP      P L ++S E    S   GP +FHL P  Q   T
Sbjct: 202 YSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPET 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,937,216
Number of Sequences: 237096
Number of extensions: 1944874
Number of successful extensions: 4977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4971
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)