Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2382
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    28   6.4  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = -2

Query: 255 GGRPARVTARTSTVSKSQWPPLQRVRRRPLSTRREVKPLRAETERGRNDXXXXXXXXXXX 76
           GG   R  +R+ + S+S+ PP +R R R   TR   +P R+ + R               
Sbjct: 393 GGMNRRSWSRSRSRSRSRSPPRRRSRSRS-RTRDRRRPRRSNSRRRSRSRDRQRRSRSRD 451

Query: 75  LNASRCTARSVTESRERFRIRNNAR 1
                   R    SR R R R+ +R
Sbjct: 452 RRRYSPDRRERRRSRSRDRRRHRSR 476


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 418 CSPLKTPPVKCGVRAAGPAVGQHAVAP 498
           C+P   PP   G     PA G +AVAP
Sbjct: 29  CAPPPPPPCGGGCGGGAPAAGGYAVAP 55


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -1

Query: 397  KYSLDSILTTRSRSLHKTLLTLDSSVYSSVTAHPHRLAIFTFSLSHNRRTAR 242
            K S DS   T S    + LLT + SV SSV +HP   ++ T   S  R+  R
Sbjct: 1048 KLSPDSSSDTSSSKNVRILLTDEQSVKSSVRSHP---SVSTRDSSEERKKVR 1096


>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical protein
            C50F2.2 protein.
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 260  QQADGPPELRRAPAQFRKVSGHR 192
            ++ D PPE+ RAP + RK++ +R
Sbjct: 976  EEEDEPPEIHRAPPRKRKINYNR 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,774
Number of Sequences: 27780
Number of extensions: 279856
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)